RLG00000033625

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000747
Physical Location & Seq
Forward (+)
29729143 .. 29731706
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033625

Sequence Viewer

Length: 633 bp
ATGCTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTCATCGGTTGAGAAAAATGCATTTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTCAATGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAGCTGTCAAAACAAGCAGGTATGTGACTGTGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACGAAAACCAAAGAAAATTTCCATATGGCTGTGTCAAACTTGGCCGCAAAGGTAATGCTTACATACTTTGGCTACATGAAGAAAAGAAGGGGGAAGAAAGGGGAAGGAACAAAGATAGAAGAAAAGAAGGGGGAAGAAAGGGAAGGAGAAGGGAGAGGTGTAGAGACTCAAGGGTTGCGACATGAGTTATTGGGAAGACAAGGAGAAAGTGTTCAGCGAAGTTCGATTTGTTGTTCAAGGAGGGTAGAGCATATTATTAGAGAAGAGAATATGATGGCAGCTCAGGAGATCATCGAGCTATATATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

211

Amino Acids

23.33

Weight (kDa)

9.61

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 237, 308
AciI CCGC 1 cut(s) 366
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 31, 127
AgsI TTSAA 3 cut(s) 126, 277, 558
AhdI GACNNNNNGTC 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 4 cut(s) 233, 269, 602, 619
AluI AGCT 4 cut(s) 233, 269, 602, 619
Alw26I GTCTC 2 cut(s) 175, 479
AlwI GGATC 1 cut(s) 235
AoxI GGCC 2 cut(s) 118, 363
ApeKI GCWGC 5 cut(s) 188, 200, 266, 314, 599
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 523
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 5 cut(s) 200, 212, 278, 301, 611
BccI CCATC 2 cut(s) 10, 589
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 175, 479
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 2 cut(s) 237, 308
BisI GCNGC 6 cut(s) 189, 201, 267, 315, 366, 600
BlsI GCNGC 6 cut(s) 190, 202, 268, 316, 367, 601
BmeRI GACNNNNNGTC 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 523
BplI GAGNNNNNCTC 2 cut(s) 81, 113
Bpu10I CCTNAGC 2 cut(s) 5, 603
BpuEI CTTGAG 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 127
Bse1I ACTGG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 31, 127
BseMII CTCAG 2 cut(s) 186, 617
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 5 cut(s) 200, 212, 278, 301, 611
BshFI GGCC 2 cut(s) 120, 365
BslI CCNNNNNNNGG 2 cut(s) 31, 127
BsmAI GTCTC 2 cut(s) 175, 479
BsnI GGCC 2 cut(s) 120, 365
Bso31I GGTCTC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 154, 227, 609
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 120, 365
BspCNI CTCAG 2 cut(s) 185, 616
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 2 cut(s) 237, 308
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 175
BsrI ACTGG 1 cut(s) 229
BssMI GATC 3 cut(s) 154, 227, 609
Bst4CI ACNGT 2 cut(s) 115, 259
Bst6I CTCTTC 1 cut(s) 579
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 5, 172, 603
BstKTI GATC 3 cut(s) 157, 230, 612
BstMAI GTCTC 2 cut(s) 175, 479
BstMBI GATC 3 cut(s) 154, 227, 609
BstMWI GCNNNNNNNGC 2 cut(s) 197, 311
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 5 cut(s) 200, 212, 278, 301, 611
BstV2I GAAGAC 1 cut(s) 523
BsuRI GGCC 2 cut(s) 120, 365
BveI ACCTGC 2 cut(s) 237, 308
Cac8I GCNNGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 321
CviAII CATG 2 cut(s) 397, 503
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 3 cut(s) 5, 172, 603
DpnI GATC 3 cut(s) 156, 229, 611
DpnII GATC 3 cut(s) 154, 227, 609
DriI GACNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 579
Eam1105I GACNNNNNGTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 579
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 99
FaeI CATG 2 cut(s) 400, 506
FatI CATG 2 cut(s) 396, 502
FauNDI CATATG 1 cut(s) 345
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 6 cut(s) 189, 201, 267, 315, 366, 600
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 6 cut(s) 189, 201, 267, 315, 366, 600
GluI GCNGC 6 cut(s) 189, 201, 267, 315, 366, 600
HaeIII GGCC 2 cut(s) 120, 365
Hin1II CATG 2 cut(s) 400, 506
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 487
HpaI GTTAAC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 605
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 6 cut(s) 29, 402, 419, 442, 458, 464
HpyCH4III ACNGT 2 cut(s) 115, 259
HpyCH4V TGCA 3 cut(s) 59, 200, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 311
HpyF3I CTNAG 3 cut(s) 5, 172, 603
Hsp92II CATG 2 cut(s) 400, 506
Ksp22I TGATCA 1 cut(s) 154
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 154, 227, 609
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 7 cut(s) 152, 210, 232, 291, 296, 303, 590
Lsp1109I GCAGC 5 cut(s) 200, 212, 278, 301, 611
MaeIII GTNAC 2 cut(s) 70, 253
MalI GATC 3 cut(s) 156, 229, 611
MboI GATC 3 cut(s) 154, 227, 609
MboII GAAGA 6 cut(s) 412, 427, 452, 467, 528, 596
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 107, 212, 337
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 2 cut(s) 470, 555
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 2 cut(s) 132, 215
MspA1I CMGCKG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 197, 311
NdeI CATATG 1 cut(s) 345
NdeII GATC 3 cut(s) 154, 227, 609
NlaIII CATG 2 cut(s) 400, 506
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 61
PceI AGGCCT 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 531
PkrI GCNGC 6 cut(s) 190, 202, 268, 316, 367, 601
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 132, 215
SatI GCNGC 6 cut(s) 189, 201, 267, 315, 366, 600
Sau3AI GATC 3 cut(s) 154, 227, 609
SchI GAGTC 1 cut(s) 481
SduI GDGCHC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 3 cut(s) 107, 212, 337
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 1 cut(s) 366
SspI AATATT 1 cut(s) 195
StuI AGGCCT 1 cut(s) 120
TaaI ACNGT 2 cut(s) 115, 259
TaqI TCGA 2 cut(s) 545, 615
TasI AATT 3 cut(s) 107, 212, 337
TauI GCSGC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 132, 215
Tru9I TTAA 2 cut(s) 132, 215
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 5 cut(s) 188, 200, 266, 314, 599
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 413
XapI RAATTY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.