Rorug02G0202500

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000747
Physical Location & Seq
Reverse (-)
18965720 .. 18967400
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0202500.1

Sequence Viewer

Length: 1074 bp
ATGGGGAGAGCTCCTTGCTGTGACAAAACCAAGGTCAAGAAAGGCCCATGGTCACCTGAAGAAGATGCCAAACTCAAGTCTTACATTGACAAGCATGGCACCGGTGGCAACTGGATTGCCTTGCCGCAGAAGATAGGTCTTAAAAGATGTGGGAAGAGCTGTCGGCTGAGATGGTTGAATTATCTCCGGCCCAATATCAAGCACGGTGGGTTCTCTGAGGAAGAAGATAACATCATCTGCAGCCTCTATATCAATATTGGAAGCAGGTGGTCTATCATTGCAGCCCAATTACCCGGGCGAACTGATAATGATATTAAGAATTACTGGAACACAAGACTGAAGAAGAAGCTTTTGGGCAAGCAGCGGAAAGAACAACAGGCACAGAATCGTAAAGCCGCCGCCAGCCTAAAGCAAGAGATCAAGAGATCAAGTACTACAACAAACTTTCATCTTCCTCCTGATGATTTTGTGAACCAAGTAAACCCTTACTGGGCCCCAGTGCTTCCTGTAGTGCTGCCAGTGATGAGTTATCAAACCCATGATGCTCAAGTACTTGATGACCACCAGGCATCCATTAAGAACATGCTGATCAAACTTGGAGGAAGATTTTCTGACACCACAAATTCTATGTATTCGCCTGTTGATCACATTTCCTCTACCTCATCACATCAGTTCTACCAGAACTCCGGTATTGATCATATGCTTGCTTGTTCACCAGCAGCCAACACCAACTATGCTCAATTGGGTCCAAGTCCAAGTCCGACCATGTTTCATGGGGTTGATCATCAGAGTGATCTAGAGGCGGAGCTAAGCGAATTGGTTTTCGGAAACAGCCAGCCTCATCAACAGTATGATGGTTTGGCTGGCTTTTATCAAATGGAGACTTTGAATAATGGTAGCACTGGAGGGACTACTAGTACTTCTGCAGAGAGTGAAATTAGTTGGGGAGACATAAGCTCCTTGGTTTATAGTACAACTACTCCTATGGTTTCTGAGTACGAAAATAGTTGTCAACAAGGCGTGCGGCCATCAGATTCTGCTTTTGCCGAGTCAACCTACTTCGGCATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

357

Amino Acids

39.71

Weight (kDa)

7.63

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 5.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.7e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 112 4.5e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 8.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 6 cut(s) 125, 364, 396, 399, 803, 1024
AcoI YGGCCR 1 cut(s) 1025
AcsI RAATTY 1 cut(s) 622
AcuI CTGAAG 2 cut(s) 78, 359
AfaI GTAC 5 cut(s) 433, 552, 919, 973, 998
AfiI CCNNNNNNNGG 1 cut(s) 490
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 178, 889
AhlI ACTAGT 1 cut(s) 914
AjnI CCWGG 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 5 cut(s) 11, 159, 349, 808, 957
AluI AGCT 5 cut(s) 11, 159, 349, 808, 957
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 875, 942
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 4 cut(s) 43, 188, 492, 1025
ApaI GGGCCC 1 cut(s) 496
ApeKI GCWGC 5 cut(s) 240, 281, 361, 514, 719
ApoI RAATTY 1 cut(s) 622
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsiGI ACCGGT 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 607
AspS9I GGNCC 5 cut(s) 44, 189, 492, 493, 746
AsuC2I CCSGG 2 cut(s) 294, 295
AsuHPI GGTGA 2 cut(s) 45, 705
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 2 cut(s) 13, 496
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 5 cut(s) 252, 293, 373, 501, 731
BccI CCATC 3 cut(s) 165, 848, 1036
BciT130I CCWGG 1 cut(s) 566
BclI TGATCA 4 cut(s) 588, 643, 694, 781
BcnI CCSGG 2 cut(s) 294, 295
BcoDI GTCTC 2 cut(s) 875, 942
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 2 cut(s) 797, 915
BfmI CTRYAG 3 cut(s) 238, 507, 924
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1025
BlpI GCTNAGC 1 cut(s) 809
BlsI GCNGC 9 cut(s) 126, 242, 283, 363, 397, 400, 516, 721, 1026
BmcAI AGTACT 3 cut(s) 433, 552, 919
Bme1390I CCNGG 3 cut(s) 294, 295, 566
Bme18I GGWCC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 5 cut(s) 44, 189, 492, 493, 746
BmiI GGNNCC 4 cut(s) 100, 494, 495, 747
BmrFI CCNGG 3 cut(s) 294, 295, 566
BmrI ACTGGG 2 cut(s) 491, 499
BmsI GCATC 3 cut(s) 55, 532, 578
BmuI ACTGGG 2 cut(s) 491, 499
BpmI CTGGAG 1 cut(s) 924
Bpu1102I GCTNAGC 1 cut(s) 809
BpuEI CTTGAG 2 cut(s) 59, 531
BpuMI CCSGG 2 cut(s) 294, 295
BsaJI CCNNGG 4 cut(s) 30, 47, 293, 960
BsaWI WCCGGW 2 cut(s) 101, 686
BsaXI ACNNNNNCTCC 6 cut(s) 668, 698, 941, 964, 971, 994
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 6 cut(s) 116, 329, 494, 497, 518, 907
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 4 cut(s) 30, 47, 293, 960
BseGI GGATG 1 cut(s) 569
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 158, 207, 984
BseNI ACTGG 6 cut(s) 116, 329, 494, 497, 518, 907
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 5 cut(s) 252, 293, 373, 501, 731
BshFI GGCC 4 cut(s) 45, 190, 494, 1027
BshNI GGYRCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 4 cut(s) 102, 187, 294, 687
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 2 cut(s) 875, 942
BsmFI GGGAC 1 cut(s) 922
BsnI GGCC 4 cut(s) 45, 190, 494, 1027
BsoBI CYCGRG 1 cut(s) 293
Bsp120I GGGCCC 1 cut(s) 492
Bsp1286I GDGCHC 2 cut(s) 13, 496
Bsp143I GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
Bsp1720I GCTNAGC 1 cut(s) 809
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 6 cut(s) 125, 364, 396, 399, 803, 1024
BspANI GGCC 4 cut(s) 45, 190, 494, 1027
BspCNI CTCAG 3 cut(s) 159, 208, 985
BspLI GGNNCC 4 cut(s) 100, 494, 495, 747
BspMAI CTGCAG 2 cut(s) 242, 928
BspMI ACCTGC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 6 cut(s) 116, 329, 494, 497, 518, 907
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 30, 47, 293, 960
BssMI GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
BssT1I CCWWGG 3 cut(s) 30, 47, 960
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 206, 849
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 6 cut(s) 359, 403, 705, 836, 865, 1022
BstDEI CTNAG 4 cut(s) 167, 216, 809, 993
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 569
BstKTI GATC 7 cut(s) 420, 428, 591, 646, 697, 784, 796
BstMAI GTCTC 2 cut(s) 875, 942
BstMBI GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 566
BstNSI RCATGY 1 cut(s) 586
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 292, 293, 564
BstSFI CTRYAG 3 cut(s) 238, 507, 924
BstSLI GKGCMC 1 cut(s) 496
BstV1I GCAGC 5 cut(s) 252, 293, 373, 501, 731
BsuRI GGCC 4 cut(s) 45, 190, 494, 1027
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 569
BtsIMutI CAGTG 3 cut(s) 504, 525, 900
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 6 cut(s) 359, 403, 705, 836, 865, 1022
CaiI CAGNNNCTG 1 cut(s) 1037
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 5 cut(s) 44, 189, 492, 493, 746
Cfr9I CCCGGG 1 cut(s) 293
Csp6I GTAC 5 cut(s) 432, 551, 918, 972, 997
CspAI ACCGGT 1 cut(s) 101
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 7 cut(s) 48, 95, 539, 583, 766, 773, 1066
CviQI GTAC 5 cut(s) 432, 551, 918, 972, 997
DdeI CTNAG 4 cut(s) 167, 216, 809, 993
DpnI GATC 7 cut(s) 419, 427, 590, 645, 696, 783, 795
DpnII GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
EaeI YGGCCR 1 cut(s) 1025
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 818
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 3 cut(s) 30, 47, 960
Eco24I GRGCYC 2 cut(s) 13, 496
Eco47I GGWCC 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 78, 359
Eco88I CYCGRG 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 3 cut(s) 30, 47, 960
EcoT38I GRGCYC 2 cut(s) 13, 496
ErhI CCWWGG 3 cut(s) 30, 47, 960
FaeI CATG 7 cut(s) 51, 98, 542, 586, 769, 776, 1069
FaqI GGGAC 1 cut(s) 922
FatI CATG 7 cut(s) 47, 94, 538, 582, 765, 772, 1065
FauNDI CATATG 1 cut(s) 699
FbaI TGATCA 4 cut(s) 588, 643, 694, 781
Fnu4HI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1025
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 2 cut(s) 13, 496
Fsp4HI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1025
FspBI CTAG 2 cut(s) 797, 915
GluI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1025
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 4 cut(s) 45, 190, 494, 1027
HapII CCGG 4 cut(s) 102, 187, 294, 687
Hin1II CATG 7 cut(s) 51, 98, 542, 586, 769, 776, 1069
HincII GTYRAC 2 cut(s) 1013, 1053
HindII GTYRAC 2 cut(s) 1013, 1053
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 3 cut(s) 385, 1034, 1049
HpaII CCGG 4 cut(s) 102, 187, 294, 687
HphI GGTGA 2 cut(s) 45, 705
Hpy166II GTNNAC 5 cut(s) 472, 481, 713, 1013, 1053
Hpy188I TCNGA 7 cut(s) 217, 613, 762, 789, 827, 994, 1033
Hpy188III TCNNGA 4 cut(s) 37, 421, 458, 797
Hpy8I GTNNAC 5 cut(s) 472, 481, 713, 1013, 1053
HpyCH4III ACNGT 2 cut(s) 206, 849
HpyCH4V TGCA 3 cut(s) 240, 281, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 4 cut(s) 167, 216, 809, 993
Hsp92II CATG 7 cut(s) 51, 98, 542, 586, 769, 776, 1069
Ksp22I TGATCA 4 cut(s) 588, 643, 694, 781
Kzo9I GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 3 cut(s) 16, 805, 962
Lsp1109I GCAGC 5 cut(s) 252, 293, 373, 501, 731
LweI GCATC 3 cut(s) 55, 532, 578
MaeI CTAG 2 cut(s) 797, 915
MaeIII GTNAC 2 cut(s) 20, 51
MalI GATC 7 cut(s) 419, 427, 590, 645, 696, 783, 795
MboI GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
MfeI CAATTG 1 cut(s) 740
MhlI GDGCHC 2 cut(s) 13, 496
MluCI AATT 7 cut(s) 178, 287, 319, 622, 740, 815, 936
MlyI GAGTC 1 cut(s) 1058
MmeI TCCRAC 1 cut(s) 785
MnlI CCTC 9 cut(s) 211, 254, 465, 593, 664, 670, 793, 849, 899
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 3 cut(s) 141, 315, 576
MslI CAYNNNNRTG 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 4 cut(s) 102, 187, 294, 687
MspR9I CCNGG 3 cut(s) 294, 295, 566
MunI CAATTG 1 cut(s) 740
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 294, 295
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 699
NdeII GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
NlaIII CATG 7 cut(s) 51, 98, 542, 586, 769, 776, 1069
NlaIV GGNNCC 4 cut(s) 100, 494, 495, 747
NmeAIII GCCGAG 1 cut(s) 1072
NmuCI GTSAC 2 cut(s) 20, 51
NspI RCATGY 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 2 cut(s) 385, 1034
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 9 cut(s) 126, 242, 283, 363, 397, 400, 516, 721, 1026
PleI GAGTC 1 cut(s) 1057
PpsI GAGTC 1 cut(s) 1057
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 564
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 4 cut(s) 100, 494, 495, 747
PspOMI GGGCCC 1 cut(s) 492
PspPI GGNCC 5 cut(s) 44, 189, 492, 493, 746
PstI CTGCAG 2 cut(s) 242, 928
PstNI CAGNNNCTG 1 cut(s) 1037
RsaI GTAC 5 cut(s) 433, 552, 919, 973, 998
RsaNI GTAC 5 cut(s) 432, 551, 918, 972, 997
RseI CAYNNNNRTG 1 cut(s) 789
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 141, 315, 576
SatI GCNGC 9 cut(s) 125, 241, 282, 362, 396, 399, 515, 720, 1025
Sau3AI GATC 7 cut(s) 417, 425, 588, 643, 694, 781, 793
Sau96I GGNCC 5 cut(s) 44, 189, 492, 493, 746
ScaI AGTACT 3 cut(s) 433, 552, 919
SchI GAGTC 1 cut(s) 1058
ScrFI CCNGG 3 cut(s) 294, 295, 566
SduI GDGCHC 2 cut(s) 13, 496
SfaNI GCATC 3 cut(s) 55, 532, 578
SfcI CTRYAG 3 cut(s) 238, 507, 924
SgrAI CRCCGGYG 1 cut(s) 101
SinI GGWCC 1 cut(s) 746
SmaI CCCGGG 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 2 cut(s) 74, 546
SmoI CTYRAG 2 cut(s) 74, 546
SpeI ACTAGT 1 cut(s) 914
Sse9I AATT 7 cut(s) 178, 287, 319, 622, 740, 815, 936
SsiI CCGC 6 cut(s) 125, 364, 396, 399, 803, 1024
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 797, 915
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 3 cut(s) 292, 293, 564
StyI CCWWGG 3 cut(s) 30, 47, 960
TaaI ACNGT 2 cut(s) 206, 849
TasI AATT 7 cut(s) 178, 287, 319, 622, 740, 815, 936
TatI WGTACW 4 cut(s) 431, 550, 917, 971
TauI GCSGC 4 cut(s) 127, 398, 401, 1027
TfiI GAWTC 2 cut(s) 385, 1034
Tru1I TTAA 3 cut(s) 141, 315, 576
Tru9I TTAA 3 cut(s) 141, 315, 576
TscAI CASTG 3 cut(s) 504, 525, 907
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 5 cut(s) 240, 281, 361, 514, 719
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 2 cut(s) 437, 761
TspMI CCCGGG 1 cut(s) 293
TspRI CASTG 3 cut(s) 504, 525, 907
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 622
XbaI TCTAGA 1 cut(s) 796
XceI RCATGY 1 cut(s) 586
XmaI CCCGGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 2 cut(s) 797, 915
ZrmI AGTACT 3 cut(s) 433, 552, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.