Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

40532779 .. 40534369

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGTTTCCAGCTTCTGCTATCTGCAGTTTAACTAGTCCTGTTTTTTCTCGCTCATCGATCTCAAACTCTCTCCTCCCTTCTCAAACCAACCCAACAACCTTCTGCTCTTCTGAATATTATTCAAAGCCTTTCAGCAGCTACACAAGTCAACACAGCTGCAGGCACTACTCGTCTTGTTTTCGTATTTCATATCGATTCTCAGATGCTGGAGAAGGTGAAGACGAAGCTGAGGATTGCAGCTTTGATGAAGCAGTGGTCCTTTTCAACACAAGAGAATACTACAAGTGCCATGACTTTCTTGAGTCACTTTGGAACAAAGCTGAAGAACCCACGCGAACTCTTTTTCATGGTATTCTACAATGCGCCGTGGGATTCCATCACCTATTCAACCAGAACCATAAAGGAGCTATGATGGAGCTGGGAGAGGGACTGTGTAAGCTTAGAAAGATGAATTTCAAAACTGGGCCATTTTACGAGTTTGAGCAACAAATCTCTGCAGCTCTCGATTTCATTTACCAAACGCAAATAGAGTTAGCCGCCTGTGGGGATGACGTTTGTGTTGCGATGGATCGATCAGAGAGATCGTACCAGCTTCTAGGCCGGTATGCTGCAGGACAGCTACTCTATACCCTGCAACTGCAAGCTGATGACGACCCTAATGAAACCATGTACATTGTGTTCCACCCTCGAATGTCTTACGGCGGTGAGCCACAAAAGGTGAAGCTTCCAACTCTCAATGCAACCACACAACATCTCACGAGTCATGGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

258

Amino Acids

29.24

Weight (kDa)

5.43

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF309	PF03745	82 - 138	7.1e-22	Domain of unknown function (DUF309)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	337
AciI	CCGC	2 cut(s)	540, 705
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	590, 674
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	126, 268, 391, 460
AhlI	ACTAGT	1 cut(s)	35
AlwI	GGATC	1 cut(s)	579
AlwNI	CAGNNNCTG	2 cut(s)	17, 209
AoxI	GGCC	3 cut(s)	467, 601, 769
ApeKI	GCWGC	5 cut(s)	138, 159, 240, 500, 611
ApoI	RAATTY	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	259, 467
AsuHPI	GGTGA	4 cut(s)	230, 374, 719, 733
AvaII	GGWCC	1 cut(s)	259
BauI	CACGAG	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	5 cut(s)	146, 150, 252, 512, 598
BccI	CCATC	3 cut(s)	387, 409, 562
BceAI	ACGGC	2 cut(s)	353, 718
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	36, 599
BfmI	CTRYAG	4 cut(s)	25, 160, 498, 612
BisI	GCNGC	6 cut(s)	139, 160, 241, 501, 540, 612
BlsI	GCNGC	6 cut(s)	140, 161, 242, 502, 541, 613
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	259, 467
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	323
Bsa29I	ATCGAT	3 cut(s)	59, 196, 574
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse118I	RCCGGY	1 cut(s)	603
Bse1I	ACTGG	1 cut(s)	469
BseCI	ATCGAT	3 cut(s)	59, 196, 574
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	216, 222
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	5 cut(s)	146, 150, 252, 512, 598
BseYI	CCCAGC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	469, 603, 771
BshVI	ATCGAT	3 cut(s)	59, 196, 574
BsiSI	CCGG	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	469, 603, 771
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	60, 571, 575, 584
BspACI	CCGC	2 cut(s)	540, 705
BspANI	GGCC	3 cut(s)	469, 603, 771
BspCNI	CTCAG	2 cut(s)	215, 223
BspDI	ATCGAT	3 cut(s)	59, 196, 574
BspFNI	CGCG	1 cut(s)	337
BspMAI	CTGCAG	4 cut(s)	29, 164, 502, 616
BspPI	GGATC	1 cut(s)	579
BspQI	GCTCTTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	469
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	60, 571, 575, 584
BssSI	CACGAG	1 cut(s)	760
Bst2BI	CACGAG	1 cut(s)	760
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	115
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	164, 645
BstDEI	CTNAG	3 cut(s)	202, 231, 443
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	556
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	4 cut(s)	63, 574, 578, 587
BstMBI	GATC	4 cut(s)	60, 571, 575, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	4 cut(s)	25, 160, 498, 612
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	5 cut(s)	146, 150, 252, 512, 598
BstV2I	GAAGAC	1 cut(s)	228
Bsu15I	ATCGAT	3 cut(s)	59, 196, 574
BsuRI	GGCC	3 cut(s)	469, 603, 771
BsuTUI	ATCGAT	3 cut(s)	59, 196, 574
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	556
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	164, 645
CaiI	CAGNNNCTG	2 cut(s)	17, 209
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	259, 467
ClaI	ATCGAT	3 cut(s)	59, 196, 574
Csp6I	GTAC	2 cut(s)	589, 673
CviAII	CATG	4 cut(s)	293, 350, 670, 767
CviQI	GTAC	2 cut(s)	589, 673
DdeI	CTNAG	3 cut(s)	202, 231, 443
DpnI	GATC	4 cut(s)	62, 573, 577, 586
DpnII	GATC	4 cut(s)	60, 571, 575, 584
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	345
FaeI	CATG	4 cut(s)	296, 353, 673, 770
FaiI	YATR	9 cut(s)	193, 294, 351, 402, 413, 609, 630, 671, 768
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	292, 349, 669, 766
Fnu4HI	GCNGC	6 cut(s)	139, 160, 241, 501, 540, 612
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	6 cut(s)	139, 160, 241, 501, 540, 612
FspBI	CTAG	2 cut(s)	36, 599
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	6 cut(s)	139, 160, 241, 501, 540, 612
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	469, 603, 771
HapII	CCGG	1 cut(s)	604
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	296, 353, 673, 770
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	2 cut(s)	440, 725
HinfI	GANTC	4 cut(s)	198, 305, 375, 763
HpaII	CCGG	1 cut(s)	604
HphI	GGTGA	4 cut(s)	230, 374, 719, 733
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	4 cut(s)	115, 205, 580, 776
Hpy188III	TCNNGA	3 cut(s)	302, 506, 760
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	90, 112, 209
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	8 cut(s)	27, 162, 240, 500, 614, 637, 643, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	202, 231, 443
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	4 cut(s)	296, 353, 673, 770
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	4 cut(s)	60, 571, 575, 584
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	407, 418
Lsp1109I	GCAGC	5 cut(s)	146, 150, 252, 512, 598
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	36, 599
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	4 cut(s)	62, 573, 577, 586
MboI	GATC	4 cut(s)	60, 571, 575, 584
MboII	GAAGA	3 cut(s)	102, 233, 338
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	2 cut(s)	314, 772
MmeI	TCCRAC	1 cut(s)	755
MnlI	CCTC	4 cut(s)	86, 226, 421, 699
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	1 cut(s)	604
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	60, 571, 575, 584
NlaIII	CATG	4 cut(s)	296, 353, 673, 770
NmuCI	GTSAC	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	198, 375
PkrI	GCNGC	6 cut(s)	140, 161, 242, 502, 541, 613
PleI	GAGTC	2 cut(s)	313, 771
PpsI	GAGTC	2 cut(s)	313, 771
PspFI	CCCAGC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	259, 467
PsrI	GAACNNNNNNTAC	2 cut(s)	665, 697
PstI	CTGCAG	4 cut(s)	29, 164, 502, 616
PstNI	CAGNNNCTG	2 cut(s)	17, 209
PvuII	CAGCTG	1 cut(s)	159
RsaI	GTAC	2 cut(s)	590, 674
RsaNI	GTAC	2 cut(s)	589, 673
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	139, 160, 241, 501, 540, 612
Sau3AI	GATC	4 cut(s)	60, 571, 575, 584
Sau96I	GGNCC	2 cut(s)	259, 467
SchI	GAGTC	2 cut(s)	314, 772
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	4 cut(s)	25, 160, 498, 612
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	2 cut(s)	540, 705
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	2 cut(s)	36, 599
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	5 cut(s)	59, 196, 507, 574, 691
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	198, 375
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	5 cut(s)	138, 159, 240, 500, 611
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	6 cut(s)	180, 264, 338, 467, 502, 678
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	454
XspI	CTAG	2 cut(s)	36, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.