Rh4AG014800

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000747
Physical Location & Seq
Reverse (-)
2863369 .. 2904394
41026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG014800.1

Sequence Viewer

Length: 1662 bp
ATGGGCTGGGCTACAGTGGGCTTGCAGAAGGCGGGGCTTGCAGGAGGCTGGGCTACAGTGGGCTTGCAGAAGGCGGGGCTTGCAGGAGGCTGGGCTGCACTGGGCTTGCGACGCAGGCAGGGATGGACGCAGGCAGGTGTGCAGCGCGCGGGTGCGCAGGCGATGTGCAAGGGCTGCGGGGGCAGCAGCAGTGCGTGGGCTGGAGGCTGCGGCAGCAGGTCGGCAGGAGGCTGGCTTGTTGCAGGCTTGCGGCTAGTGCTGCAGGAGGACTGCAAGAAACAAGGATTGCTCCTTCCAATCTTTACACTCAAGAGATGTGGGCTGGTCAGGGAAGCTATAAACCTCTACACTTCACTCAGAGCTCGGAACATTGCTCCTGACAATCTTCTGCTTCTCTTTGTTGCCAAGGCTTGTGCGGTTTTGGGTAATCTTAGAAAAGCAACAGAGCTTCTTGATGAGGCAATTCGGTTCGGGTTTCATTTGGATATTGCTTTGGGCAATGCCATGGTTGAAATGCAGGGTTTGGTGGCGTTTAGAGAGATGGGTTTGATTGGAGTGGGACCCAATGTGGTGACGGTGTCGATGGTCCTGCATGCTTGCTCTGAGTTGAGGGATTTGAATTCGGGATCAATTCATCATCGAGATGTTCATGATGAAATTGAAAAATCCAAAGGACAGGAGGTTAGAGCAGTGTTCTACAAGGTGGGTCCCTCAGATGTCCAACACCAAAGAGGGGCTATCAGTGAGGCATTATATGCGCTTGATCAATGCAAATACAAAGACAGCATGGACAAATGGAAGGCAGCTCTCAAGGAAGCAGCAGATTTGTCTGGATGGCCTTTCAAGGATGGCGATGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCTTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGTGACTGTGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGTTGTGTCAAACTTGACTGCAAAGATGCCTCCTCATAGAAGCATTGCCGACCCATCAACCATGGCTGCAGTGCTTCAGCTGAGTCCTCTGGTCTCAGCCAGCCCAAGTTTCATATCTCCCACTAACCAAACCGAACCCAAATCCATAGCCAAGGGTACTTCCCCAACTGGGTCACTTAAAAACTGTAAAACCATAAACCAAGTGAAGCAACTTCATTGTCACATCACTAAGAAAGGCCTCAGTTACAGACCCTCAAATGTCACCAAGCTCATCAGCACATGCGCAGAAATGGGCACCTTCGAAAGCTTAGATTATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

553

Amino Acids

59.11

Weight (kDa)

9.52

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 220 - 283 2.4e-07 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc16I TGCGCA 2 cut(s) 156, 1624
Acc36I ACCTGC 4 cut(s) 125, 207, 1230, 1301
AccB1I GGYRCC 1 cut(s) 1634
AccII CGCG 2 cut(s) 147, 149
AciI CCGC 7 cut(s) 32, 74, 149, 177, 210, 250, 416
AclWI GGATC 2 cut(s) 634, 1228
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 2 cut(s) 1142, 1400
AfaI GTAC 2 cut(s) 1315, 1498
AfiI CCNNNNNNNGG 3 cut(s) 733, 923, 1509
AgsI TTSAA 5 cut(s) 512, 619, 662, 844, 1270
AhdI GACNNNNNGTC 1 cut(s) 1160
AluBI AGCT 9 cut(s) 335, 362, 448, 806, 947, 1262, 1420, 1609, 1647
AluI AGCT 9 cut(s) 335, 362, 448, 806, 947, 1262, 1420, 1609, 1647
Alw21I GWGCWC 2 cut(s) 364, 949
Alw26I GTCTC 2 cut(s) 1168, 1438
AlwI GGATC 2 cut(s) 634, 1228
AoxI GGCC 2 cut(s) 836, 1576
ApoI RAATTY 1 cut(s) 619
AspLEI GCGC 5 cut(s) 147, 149, 157, 760, 1625
AspS9I GGNCC 3 cut(s) 560, 586, 707
AsuHPI GGTGA 3 cut(s) 583, 879, 1594
AsuII TTCGAA 1 cut(s) 1641
AvaII GGWCC 3 cut(s) 560, 586, 707
BaeGI GKGCMC 1 cut(s) 1637
BanI GGYRCC 1 cut(s) 1634
BanII GRGCYC 3 cut(s) 364, 949, 1092
Bbv12I GWGCWC 2 cut(s) 364, 949
BccI CCATC 7 cut(s) 117, 535, 577, 828, 842, 902, 1402
BceAI ACGGC 1 cut(s) 986
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BclI TGATCA 2 cut(s) 763, 1147
BcoDI GTCTC 2 cut(s) 1168, 1438
BfaI CTAG 2 cut(s) 254, 963
BfmI CTRYAG 5 cut(s) 12, 54, 260, 1308, 1407
BfuAI ACCTGC 4 cut(s) 125, 207, 1230, 1301
Bme18I GGWCC 3 cut(s) 560, 586, 707
BmeRI GACNNNNNGTC 1 cut(s) 1160
BmgT120I GGNCC 3 cut(s) 560, 586, 707
BmiI GGNNCC 5 cut(s) 561, 562, 708, 709, 1636
BmrI ACTGGG 2 cut(s) 110, 1518
BmsI GCATC 5 cut(s) 844, 988, 1042, 1061, 1356
BmuI ACTGGG 2 cut(s) 110, 1518
BplI GAGNNNNNCTC 2 cut(s) 1074, 1106
BpmI CTGGAG 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 1641
BpuEI CTTGAG 3 cut(s) 293, 794, 933
BsaI GGTCTC 2 cut(s) 1168, 1438
BsaJI CCNNGG 4 cut(s) 405, 504, 1401, 1491
Bsc4I CCNNNNNNNGG 3 cut(s) 733, 923, 1509
Bse1I ACTGG 3 cut(s) 105, 1222, 1513
Bse3DI GCAATG 3 cut(s) 369, 505, 1383
BseDI CCNNGG 4 cut(s) 405, 504, 1401, 1491
BseGI GGATG 3 cut(s) 128, 839, 853
BseLI CCNNNNNNNGG 3 cut(s) 733, 923, 1509
BseMI GCAATG 3 cut(s) 369, 505, 1383
BseMII CTCAG 7 cut(s) 370, 594, 726, 1047, 1412, 1449, 1594
BseNI ACTGG 3 cut(s) 105, 1222, 1513
BsePI GCGCGC 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 1362
BseSI GKGCMC 1 cut(s) 1637
BseYI CCCAGC 3 cut(s) 6, 48, 90
BsgI GTGCAG 2 cut(s) 81, 161
Bsh1236I CGCG 2 cut(s) 147, 149
BshFI GGCC 2 cut(s) 838, 1578
BshNI GGYRCC 1 cut(s) 1634
BsiHKAI GWGCWC 2 cut(s) 364, 949
BslFI GGGAC 2 cut(s) 573, 693
BslI CCNNNNNNNGG 3 cut(s) 733, 923, 1509
BsmAI GTCTC 2 cut(s) 1168, 1438
BsmFI GGGAC 2 cut(s) 573, 693
BsnI GGCC 2 cut(s) 838, 1578
Bso31I GGTCTC 2 cut(s) 1168, 1438
Bsp119I TTCGAA 1 cut(s) 1641
Bsp1286I GDGCHC 4 cut(s) 364, 949, 1092, 1637
Bsp143I GATC 4 cut(s) 626, 763, 1147, 1220
Bsp19I CCATGG 2 cut(s) 504, 1401
BspACI CCGC 7 cut(s) 32, 74, 149, 177, 210, 250, 416
BspANI GGCC 2 cut(s) 838, 1578
BspCNI CTCAG 7 cut(s) 369, 595, 725, 1048, 1413, 1448, 1593
BspFNI CGCG 2 cut(s) 147, 149
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 5 cut(s) 561, 562, 708, 709, 1636
BspMAI CTGCAG 3 cut(s) 264, 1312, 1411
BspMI ACCTGC 4 cut(s) 125, 207, 1230, 1301
BspPI GGATC 2 cut(s) 634, 1228
BspT104I TTCGAA 1 cut(s) 1641
BspT107I GGYRCC 1 cut(s) 1634
BspTNI GGTCTC 2 cut(s) 1168, 1438
BsrDI GCAATG 3 cut(s) 369, 505, 1383
BsrI ACTGG 3 cut(s) 105, 1222, 1513
BssECI CCNNGG 4 cut(s) 405, 504, 1401, 1491
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 4 cut(s) 626, 763, 1147, 1220
BssT1I CCWWGG 4 cut(s) 405, 504, 1401, 1491
Bst4CI ACNGT 7 cut(s) 16, 58, 577, 1108, 1228, 1252, 1526
BstAPI GCANNNNNTGC 3 cut(s) 174, 755, 1190
BstBI TTCGAA 1 cut(s) 1641
BstDSI CCRYGG 2 cut(s) 504, 1401
BstF5I GGATG 3 cut(s) 128, 839, 853
BstFNI CGCG 2 cut(s) 147, 149
BstHHI GCGC 5 cut(s) 147, 149, 157, 760, 1625
BstKTI GATC 4 cut(s) 629, 766, 1150, 1223
BstMAI GTCTC 2 cut(s) 1168, 1438
BstMBI GATC 4 cut(s) 626, 763, 1147, 1220
BstNSI RCATGY 2 cut(s) 596, 1623
BstSFI CTRYAG 5 cut(s) 12, 54, 260, 1308, 1407
BstSLI GKGCMC 1 cut(s) 1637
BstUI CGCG 2 cut(s) 147, 149
BsuRI GGCC 2 cut(s) 838, 1578
BtgI CCRYGG 2 cut(s) 504, 1401
BtgZI GCGATG 2 cut(s) 176, 867
BtsCI GGATG 3 cut(s) 128, 839, 853
BtsI GCAGTG 3 cut(s) 196, 696, 1416
BtsIMutI CAGTG 8 cut(s) 21, 63, 98, 196, 696, 748, 1125, 1416
BveI ACCTGC 4 cut(s) 125, 207, 1230, 1301
CciI TCATGA 1 cut(s) 649
CfoI GCGC 5 cut(s) 147, 149, 157, 760, 1625
Cfr13I GGNCC 3 cut(s) 560, 586, 707
CseI GACGC 2 cut(s) 120, 136
Csp6I GTAC 2 cut(s) 1314, 1497
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 6 cut(s) 505, 593, 650, 787, 1402, 1620
CviQI GTAC 2 cut(s) 1314, 1497
DpnI GATC 4 cut(s) 628, 765, 1149, 1222
DpnII GATC 4 cut(s) 626, 763, 1147, 1220
DriI GACNNNNNGTC 1 cut(s) 1160
Eam1105I GACNNNNNGTC 1 cut(s) 1160
Ecl136II GAGCTC 2 cut(s) 362, 947
Eco130I CCWWGG 4 cut(s) 405, 504, 1401, 1491
Eco147I AGGCCT 1 cut(s) 1578
Eco24I GRGCYC 3 cut(s) 364, 949, 1092
Eco31I GGTCTC 2 cut(s) 1168, 1438
Eco47I GGWCC 3 cut(s) 560, 586, 707
Eco53kI GAGCTC 2 cut(s) 362, 947
Eco57I CTGAAG 2 cut(s) 1142, 1400
EcoICRI GAGCTC 2 cut(s) 362, 947
EcoO109I RGGNCCY 2 cut(s) 560, 707
EcoRI GAATTC 1 cut(s) 619
EcoT14I CCWWGG 4 cut(s) 405, 504, 1401, 1491
EcoT38I GRGCYC 3 cut(s) 364, 949, 1092
ErhI CCWWGG 4 cut(s) 405, 504, 1401, 1491
FaeI CATG 6 cut(s) 508, 596, 653, 790, 1405, 1623
FaqI GGGAC 2 cut(s) 573, 693
FatI CATG 6 cut(s) 504, 592, 649, 786, 1401, 1619
FauI CCCGC 4 cut(s) 25, 67, 142, 170
FauNDI CATATG 1 cut(s) 1338
FbaI TGATCA 2 cut(s) 763, 1147
FokI GGATG 3 cut(s) 135, 846, 860
FriOI GRGCYC 3 cut(s) 364, 949, 1092
FspBI CTAG 2 cut(s) 254, 963
FspI TGCGCA 2 cut(s) 156, 1624
GlaI GCGC 5 cut(s) 146, 148, 156, 759, 1624
GsaI CCCAGC 3 cut(s) 10, 52, 94
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 838, 1578
HgaI GACGC 2 cut(s) 120, 136
HhaI GCGC 5 cut(s) 147, 149, 157, 760, 1625
Hin1II CATG 6 cut(s) 508, 596, 653, 790, 1405, 1623
Hin6I GCGC 5 cut(s) 145, 147, 155, 758, 1623
HinP1I GCGC 5 cut(s) 145, 147, 155, 758, 1623
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HindIII AAGCTT 1 cut(s) 1645
HinfI GANTC 1 cut(s) 1423
HpaI GTTAAC 1 cut(s) 1126
HphI GGTGA 3 cut(s) 583, 879, 1594
Hpy166II GTNNAC 2 cut(s) 1006, 1126
Hpy188I TCNGA 5 cut(s) 359, 366, 604, 715, 1057
Hpy188III TCNNGA 8 cut(s) 310, 377, 452, 624, 641, 650, 831, 950
Hpy8I GTNNAC 2 cut(s) 1006, 1126
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 6 cut(s) 22, 64, 302, 793, 921, 1648
HpyCH4III ACNGT 7 cut(s) 16, 58, 577, 1108, 1228, 1252, 1526
Hsp92II CATG 6 cut(s) 508, 596, 653, 790, 1405, 1623
HspAI GCGC 5 cut(s) 145, 147, 155, 758, 1623
KflI GGGWCCC 2 cut(s) 560, 707
Ksp22I TGATCA 2 cut(s) 763, 1147
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 4 cut(s) 626, 763, 1147, 1220
LmnI GCTCC 3 cut(s) 294, 379, 1256
LweI GCATC 5 cut(s) 844, 988, 1042, 1061, 1356
MaeI CTAG 2 cut(s) 254, 963
MaeIII GTNAC 7 cut(s) 571, 1063, 1246, 1512, 1559, 1583, 1600
MalI GATC 4 cut(s) 628, 765, 1149, 1222
MboI GATC 4 cut(s) 626, 763, 1147, 1220
MboII GAAGA 1 cut(s) 377
MfeI CAATTG 1 cut(s) 987
MhlI GDGCHC 4 cut(s) 364, 949, 1092, 1637
MluCI AATT 7 cut(s) 462, 619, 630, 657, 987, 1100, 1205
MlyI GAGTC 1 cut(s) 1432
MmeI TCCRAC 1 cut(s) 745
MseI TTAA 3 cut(s) 1125, 1208, 1518
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 1420
MunI CAATTG 1 cut(s) 987
MvnI CGCG 2 cut(s) 147, 149
NcoI CCATGG 2 cut(s) 504, 1401
NdeI CATATG 1 cut(s) 1338
NdeII GATC 4 cut(s) 626, 763, 1147, 1220
NlaIII CATG 6 cut(s) 508, 596, 653, 790, 1405, 1623
NlaIV GGNNCC 5 cut(s) 561, 562, 708, 709, 1636
NmuCI GTSAC 5 cut(s) 571, 1246, 1512, 1559, 1600
NsbI TGCGCA 2 cut(s) 156, 1624
NspI RCATGY 2 cut(s) 596, 1623
NspV TTCGAA 1 cut(s) 1641
PaeI GCATGC 1 cut(s) 596
PagI TCATGA 1 cut(s) 649
PaqCI CACCTGC 1 cut(s) 125
PauI GCGCGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 1578
PflFI GACNNNGTC 1 cut(s) 577
PleI GAGTC 1 cut(s) 1431
PpsI GAGTC 1 cut(s) 1431
PpuMI RGGWCCY 2 cut(s) 560, 707
Psp124BI GAGCTC 2 cut(s) 364, 949
Psp5II RGGWCCY 2 cut(s) 560, 707
PspFI CCCAGC 3 cut(s) 6, 48, 90
PspN4I GGNNCC 5 cut(s) 561, 562, 708, 709, 1636
PspPI GGNCC 3 cut(s) 560, 586, 707
PspPPI RGGWCCY 2 cut(s) 560, 707
PstI CTGCAG 3 cut(s) 264, 1312, 1411
PsyI GACNNNGTC 1 cut(s) 577
PteI GCGCGC 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 1420
RsaI GTAC 2 cut(s) 1315, 1498
RsaNI GTAC 2 cut(s) 1314, 1497
RseI CAYNNNNRTG 1 cut(s) 642
SacI GAGCTC 2 cut(s) 364, 949
SaqAI TTAA 3 cut(s) 1125, 1208, 1518
Sau3AI GATC 4 cut(s) 626, 763, 1147, 1220
Sau96I GGNCC 3 cut(s) 560, 586, 707
SchI GAGTC 1 cut(s) 1432
SduI GDGCHC 4 cut(s) 364, 949, 1092, 1637
SfaNI GCATC 5 cut(s) 844, 988, 1042, 1061, 1356
SfcI CTRYAG 5 cut(s) 12, 54, 260, 1308, 1407
SfuI TTCGAA 1 cut(s) 1641
SinI GGWCC 3 cut(s) 560, 586, 707
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 3 cut(s) 308, 809, 948
SmoI CTYRAG 3 cut(s) 308, 809, 948
SphI GCATGC 1 cut(s) 596
Sse9I AATT 7 cut(s) 462, 619, 630, 657, 987, 1100, 1205
SseBI AGGCCT 1 cut(s) 1578
SsiI CCGC 7 cut(s) 32, 74, 149, 177, 210, 250, 416
SspI AATATT 1 cut(s) 1188
SspMI CTAG 2 cut(s) 254, 963
SstI GAGCTC 2 cut(s) 364, 949
StuI AGGCCT 1 cut(s) 1578
StyI CCWWGG 4 cut(s) 405, 504, 1401, 1491
TaaI ACNGT 7 cut(s) 16, 58, 577, 1108, 1228, 1252, 1526
TaqI TCGA 3 cut(s) 581, 640, 1641
TasI AATT 7 cut(s) 462, 619, 630, 657, 987, 1100, 1205
TauI GCSGC 2 cut(s) 213, 253
Tru1I TTAA 3 cut(s) 1125, 1208, 1518
Tru9I TTAA 3 cut(s) 1125, 1208, 1518
TscAI CASTG 8 cut(s) 21, 63, 105, 196, 696, 748, 1125, 1416
TseFI GTSAC 5 cut(s) 571, 1246, 1512, 1559, 1600
Tsp45I GTSAC 5 cut(s) 571, 1246, 1512, 1559, 1600
TspDTI ATGAA 7 cut(s) 467, 623, 638, 669, 1041, 1441, 1544
TspRI CASTG 8 cut(s) 21, 63, 105, 196, 696, 748, 1125, 1416
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 560, 586, 707
XapI RAATTY 1 cut(s) 619
XceI RCATGY 2 cut(s) 596, 1623
XspI CTAG 2 cut(s) 254, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.