Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Forward (+)

41330492 .. 41336105

Gene Structure 5614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCAAATAGATTACAAGTTGCATTTCTTTTCATTTGTACATGAACTTGATCCTGCGCAATCAAAGATTGCATTTGTTATGTTCAAGGATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGATTGTGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCCGAAATTGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTGTAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGATAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGGGACTGTGGGAGCACCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGCCAAAGGCAGCTGAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

239

Amino Acids

25.97

Weight (kDa)

9.52

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
Acc36I	ACCTGC	3 cut(s)	564, 628, 635
AclWI	GGATC	2 cut(s)	44, 562
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	3 cut(s)	39, 156, 649
AfiI	CCNNNNNNNGG	2 cut(s)	257, 454
AgsI	TTSAA	4 cut(s)	85, 104, 146, 604
AhdI	GACNNNNNGTC	1 cut(s)	494
AluBI	AGCT	3 cut(s)	98, 281, 710
AluI	AGCT	3 cut(s)	98, 281, 710
Alw21I	GWGCWC	2 cut(s)	283, 595
Alw26I	GTCTC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	44, 562
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	200, 515, 527, 707
AseI	ATTAAT	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	283, 426
Bbv12I	GWGCWC	2 cut(s)	283, 595
BbvI	GCAGC	3 cut(s)	187, 527, 539
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	297
BfuAI	ACCTGC	3 cut(s)	564, 628, 635
BisI	GCNGC	4 cut(s)	201, 516, 528, 708
BlsI	GCNGC	4 cut(s)	202, 517, 529, 709
BmeRI	GACNNNNNGTC	1 cut(s)	494
BmsI	GCATC	5 cut(s)	79, 159, 322, 376, 395
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
BpuEI	CTTGAG	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 454
Bse1I	ACTGG	1 cut(s)	556
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	257, 454
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	187, 527, 539
BshFI	GGCC	1 cut(s)	447
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	283, 595
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	257, 454
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	283, 426, 595
Bsp1407I	TGTACA	1 cut(s)	37
Bsp143I	GATC	3 cut(s)	49, 481, 554
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	122
BspMI	ACCTGC	3 cut(s)	564, 628, 635
BspPI	GGATC	2 cut(s)	44, 562
BspTNI	GGTCTC	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	3 cut(s)	49, 481, 554
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	562, 586
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	3 cut(s)	52, 484, 557
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	3 cut(s)	49, 481, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 524
BstV1I	GCAGC	3 cut(s)	187, 527, 539
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	3 cut(s)	564, 628, 635
CfoI	GCGC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	38, 155, 648
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	9 cut(s)	98, 246, 281, 347, 424, 447, 677, 700, 710
CviKI_1	RGCY	9 cut(s)	98, 246, 281, 347, 424, 447, 677, 700, 710
CviQI	GTAC	3 cut(s)	38, 155, 648
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	3 cut(s)	51, 483, 556
DpnII	GATC	3 cut(s)	49, 481, 554
DriI	GACNNNNNGTC	1 cut(s)	494
Eam1105I	GACNNNNNGTC	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	596
Eco147I	AGGCCT	1 cut(s)	447
Eco24I	GRGCYC	2 cut(s)	283, 426
Eco31I	GGTCTC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	2 cut(s)	283, 426
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	1 cut(s)	44
FaiI	YATR	9 cut(s)	42, 80, 134, 153, 270, 302, 579, 672, 674
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	672
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	201, 516, 528, 708
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	283, 426
Fsp4HI	GCNGC	4 cut(s)	201, 516, 528, 708
FspBI	CTAG	1 cut(s)	297
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	4 cut(s)	201, 516, 528, 708
HaeIII	GGCC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HpaI	GTTAAC	1 cut(s)	460
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	2 cut(s)	340, 460
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	2 cut(s)	101, 284
Hpy8I	GTNNAC	2 cut(s)	340, 460
HpyAV	CCTTC	2 cut(s)	255, 707
HpyCH4III	ACNGT	2 cut(s)	562, 586
HpyCH4V	TGCA	7 cut(s)	4, 22, 71, 386, 527, 644, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 524
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	44
HspAI	GCGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	481
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	49, 481, 554
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	3 cut(s)	187, 527, 539
LweI	GCATC	5 cut(s)	79, 159, 322, 376, 395
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	127, 397
MalI	GATC	3 cut(s)	51, 483, 556
MboI	GATC	3 cut(s)	49, 481, 554
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	3 cut(s)	283, 426, 595
MluCI	AATT	6 cut(s)	148, 159, 176, 321, 434, 539
MnlI	CCTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	162, 459, 542
MspA1I	CMGCKG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 524
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	3 cut(s)	49, 481, 554
NlaIII	CATG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	127
NsbI	TGCGCA	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	202, 517, 529, 709
PshBI	ATTAAT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	3 cut(s)	39, 156, 649
RsaNI	GTAC	3 cut(s)	38, 155, 648
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	162, 459, 542
SatI	GCNGC	4 cut(s)	201, 516, 528, 708
Sau3AI	GATC	3 cut(s)	49, 481, 554
SduI	GDGCHC	3 cut(s)	283, 426, 595
SfaNI	GCATC	5 cut(s)	79, 159, 322, 376, 395
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	6 cut(s)	148, 159, 176, 321, 434, 539
SseBI	AGGCCT	1 cut(s)	447
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	562, 586
TaqI	TCGA	1 cut(s)	122
TasI	AATT	6 cut(s)	148, 159, 176, 321, 434, 539
TatI	WGTACW	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	162, 459, 542
Tru9I	TTAA	3 cut(s)	162, 459, 542
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	200, 515, 527, 707
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	21, 57, 375
TspRI	CASTG	1 cut(s)	459
VspI	ATTAAT	1 cut(s)	162
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.