Rroxscaffold_2G00110930

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000747
Physical Location & Seq
Forward (+)
35435135 .. 35435914
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110930.1

Sequence Viewer

Length: 222 bp
ATGGTTAATCGGATTATGACTATATCTCCTGTTGAAAATTATGTACCAATTAATGAGATGCTGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGCAAGTGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

73

Amino Acids

8.01

Weight (kDa)

9.22

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 112
AseI ATTAAT 1 cut(s) 51
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 149
BfaI CTAG 1 cut(s) 126
BmsI GCATC 3 cut(s) 48, 151, 205
BpuEI CTTGAG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 219
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 3 cut(s) 75, 110, 176
CviKI_1 RGCY 3 cut(s) 75, 110, 176
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 112
FaiI YATR 5 cut(s) 17, 23, 42, 99, 131
FalI AAGNNNNNCTT 1 cut(s) 202
FriOI GRGCYC 1 cut(s) 112
FspBI CTAG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 137, 215
HpyF3I CTNAG 1 cut(s) 219
LpnPI CCDG 2 cut(s) 42, 47
LweI GCATC 3 cut(s) 48, 151, 205
MaeI CTAG 1 cut(s) 126
MfeI CAATTG 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 3 cut(s) 37, 48, 150
MseI TTAA 2 cut(s) 6, 51
MunI CAATTG 1 cut(s) 150
PshBI ATTAAT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 112
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 6, 51
SduI GDGCHC 1 cut(s) 112
SetI ASST 2 cut(s) 112, 145
SfaNI GCATC 3 cut(s) 48, 151, 205
SgeI CNNG 7 cut(s) 41, 74, 125, 138, 170, 178, 184
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 3 cut(s) 37, 48, 150
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 112
TasI AATT 3 cut(s) 37, 48, 150
Tru1I TTAA 2 cut(s) 6, 51
Tru9I TTAA 2 cut(s) 6, 51
TspDTI ATGAA 1 cut(s) 204
VspI ATTAAT 1 cut(s) 51
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.