RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 24 |
| AclWI | GGATC | 1 cut(s) | 454 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 173, 370 |
| AgsI | TTSAA | 4 cut(s) | 7, 52, 71, 476 |
| AluBI | AGCT | 3 cut(s) | 65, 197, 468 |
| AluI | AGCT | 3 cut(s) | 65, 197, 468 |
| Alw21I | GWGCWC | 1 cut(s) | 199 |
| AlwI | GGATC | 1 cut(s) | 454 |
| AoxI | GGCC | 1 cut(s) | 361 |
| ApeKI | GCWGC | 3 cut(s) | 116, 419, 465 |
| AspLEI | GCGC | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 1 cut(s) | 129 |
| BanII | GRGCYC | 2 cut(s) | 199, 342 |
| Bbv12I | GWGCWC | 1 cut(s) | 199 |
| BbvI | GCAGC | 3 cut(s) | 103, 431, 477 |
| BccI | CCATC | 1 cut(s) | 152 |
| BceAI | ACGGC | 1 cut(s) | 236 |
| BciVI | GTATCC | 1 cut(s) | 4 |
| BfaI | CTAG | 1 cut(s) | 213 |
| BfuI | GTATCC | 1 cut(s) | 4 |
| BisI | GCNGC | 3 cut(s) | 117, 420, 466 |
| BlsI | GCNGC | 3 cut(s) | 118, 421, 467 |
| BmsI | GCATC | 3 cut(s) | 46, 292, 311 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 324, 356 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaBI | GATNNNNATC | 1 cut(s) | 15 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 173, 370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 15 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseJI | GATNNNNATC | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 173, 370 |
| BseMII | CTCAG | 1 cut(s) | 297 |
| BseXI | GCAGC | 3 cut(s) | 103, 431, 477 |
| BshFI | GGCC | 1 cut(s) | 363 |
| BsiHKAI | GWGCWC | 1 cut(s) | 199 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 173, 370 |
| BsnI | GGCC | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 199, 342 |
| Bsp143I | GATC | 1 cut(s) | 446 |
| BspANI | GGCC | 1 cut(s) | 363 |
| BspCNI | CTCAG | 1 cut(s) | 298 |
| BspPI | GGATC | 1 cut(s) | 454 |
| BssMI | GATC | 1 cut(s) | 446 |
| Bst4CI | ACNGT | 1 cut(s) | 454 |
| BstDEI | CTNAG | 1 cut(s) | 306 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstHHI | GCGC | 1 cut(s) | 25 |
| BstKTI | GATC | 1 cut(s) | 449 |
| BstMBI | GATC | 1 cut(s) | 446 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 122 |
| BstV1I | GCAGC | 3 cut(s) | 103, 431, 477 |
| BsuI | GTATCC | 1 cut(s) | 4 |
| BsuRI | GGCC | 1 cut(s) | 363 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| CfoI | GCGC | 1 cut(s) | 25 |
| CviJI | RGCY | 8 cut(s) | 65, 162, 197, 251, 263, 340, 363, 468 |
| CviKI_1 | RGCY | 8 cut(s) | 65, 162, 197, 251, 263, 340, 363, 468 |
| DdeI | CTNAG | 1 cut(s) | 306 |
| DpnI | GATC | 1 cut(s) | 448 |
| DpnII | GATC | 1 cut(s) | 446 |
| Ecl136II | GAGCTC | 1 cut(s) | 197 |
| Eco147I | AGGCCT | 1 cut(s) | 363 |
| Eco24I | GRGCYC | 2 cut(s) | 199, 342 |
| Eco53kI | GAGCTC | 1 cut(s) | 197 |
| EcoICRI | GAGCTC | 1 cut(s) | 197 |
| EcoT38I | GRGCYC | 2 cut(s) | 199, 342 |
| FaiI | YATR | 3 cut(s) | 47, 186, 218 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 420, 466 |
| FokI | GGATG | 1 cut(s) | 68 |
| FriOI | GRGCYC | 2 cut(s) | 199, 342 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 420, 466 |
| FspBI | CTAG | 1 cut(s) | 213 |
| FspI | TGCGCA | 1 cut(s) | 24 |
| GlaI | GCGC | 1 cut(s) | 24 |
| GluI | GCNGC | 3 cut(s) | 117, 420, 466 |
| HaeIII | GGCC | 1 cut(s) | 363 |
| HhaI | GCGC | 1 cut(s) | 25 |
| Hin6I | GCGC | 1 cut(s) | 23 |
| HinP1I | GCGC | 1 cut(s) | 23 |
| HincII | GTYRAC | 1 cut(s) | 376 |
| HindII | GTYRAC | 1 cut(s) | 376 |
| HpaI | GTTAAC | 1 cut(s) | 376 |
| HphI | GGTGA | 1 cut(s) | 129 |
| Hpy166II | GTNNAC | 2 cut(s) | 256, 376 |
| Hpy188I | TCNGA | 2 cut(s) | 307, 394 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 200 |
| Hpy8I | GTNNAC | 2 cut(s) | 256, 376 |
| HpyAV | CCTTC | 1 cut(s) | 171 |
| HpyCH4III | ACNGT | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 4 cut(s) | 38, 224, 302, 419 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 122 |
| HpyF3I | CTNAG | 1 cut(s) | 306 |
| HspAI | GCGC | 1 cut(s) | 23 |
| KspAI | GTTAAC | 1 cut(s) | 376 |
| Kzo9I | GATC | 1 cut(s) | 446 |
| LpnPI | CCDG | 1 cut(s) | 33 |
| Lsp1109I | GCAGC | 3 cut(s) | 103, 431, 477 |
| LweI | GCATC | 3 cut(s) | 46, 292, 311 |
| MaeI | CTAG | 1 cut(s) | 213 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 1 cut(s) | 448 |
| MboI | GATC | 1 cut(s) | 446 |
| MfeI | CAATTG | 2 cut(s) | 92, 237 |
| MhlI | GDGCHC | 2 cut(s) | 199, 342 |
| MluCI | AATT | 4 cut(s) | 92, 237, 350, 431 |
| MnlI | CCTC | 2 cut(s) | 130, 142 |
| MseI | TTAA | 2 cut(s) | 375, 434 |
| MunI | CAATTG | 2 cut(s) | 92, 237 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 122 |
| NdeII | GATC | 1 cut(s) | 446 |
| NsbI | TGCGCA | 1 cut(s) | 24 |
| PceI | AGGCCT | 1 cut(s) | 363 |
| PkrI | GCNGC | 3 cut(s) | 118, 421, 467 |
| Psp124BI | GAGCTC | 1 cut(s) | 199 |
| SacI | GAGCTC | 1 cut(s) | 199 |
| SaqAI | TTAA | 2 cut(s) | 375, 434 |
| SatI | GCNGC | 3 cut(s) | 117, 420, 466 |
| Sau3AI | GATC | 1 cut(s) | 446 |
| SduI | GDGCHC | 2 cut(s) | 199, 342 |
| SetI | ASST | 4 cut(s) | 67, 199, 232, 470 |
| SfaNI | GCATC | 3 cut(s) | 46, 292, 311 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| Sse9I | AATT | 4 cut(s) | 92, 237, 350, 431 |
| SseBI | AGGCCT | 1 cut(s) | 363 |
| SspI | AATATT | 1 cut(s) | 414 |
| SspMI | CTAG | 1 cut(s) | 213 |
| SstI | GAGCTC | 1 cut(s) | 199 |
| StuI | AGGCCT | 1 cut(s) | 363 |
| TaaI | ACNGT | 1 cut(s) | 454 |
| TasI | AATT | 4 cut(s) | 92, 237, 350, 431 |
| Tru1I | TTAA | 2 cut(s) | 375, 434 |
| Tru9I | TTAA | 2 cut(s) | 375, 434 |
| TscAI | CASTG | 1 cut(s) | 375 |
| TseI | GCWGC | 3 cut(s) | 116, 419, 465 |
| TspDTI | ATGAA | 1 cut(s) | 291 |
| TspRI | CASTG | 1 cut(s) | 375 |
| XspI | CTAG | 1 cut(s) | 213 |