Rh5AG194500

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000747
Physical Location & Seq
Reverse (-)
22549957 .. 22557030
7074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG194500.1

Sequence Viewer

Length: 924 bp
ATGCCGAAATTGGTGGAAAGTGATGTTTGTGCTGCCCCTGCTGAAAGTGTTTCACCAAATGTTGAGGATAAAGATGGCTCTCCTAACATTGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAATGTCTAGTATGTTTGTAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAATAACTTCCTTTGACAAGAGAGTGGGGCTCACAAAGAAATTGATAGTAGGCCTTTCAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAAATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAACTGTCAAAACAAGCAGGTATGGGACTGTGGGAGCACCTTGGTTCAATGGTGCTTTTAGCAAGGTGGTAAAGGCAGGGCAGGTTGCAGGTACGAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGATTATGTATTCAACACAATTGAATCCCTCCAGCTAGCCACAAAGGGCCGGGTTATGCACACACATTTCTTTACCAAAGAAGGGACAGGGTATTTTAGTATCTGCTTGGAAGACTTCAAGGTGGGATGTGAAGCTAAAGTGATGCCCTGTAAGCATAGGTTTCATCATCCTTGTATTGCAGCTGAGTGGGTCGTCAAGCGTGCATCATGTCCGCTCTGTAGACTCGATTTGAGAGATCAACTAGAATGTCTCATCCCTAACCAGCCTGACGAGCCTGATCAGCATGCGTCCTCCTGGCCTTACAGATACACTTGGATGACAGATAGTCTGTACTTTAAGGCTCGGATGGAATACCGTGAAGGATGGTATGCTCGCCAAGATCCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

307

Amino Acids

34.47

Weight (kDa)

9.14

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 211 - 252 5.5e-10 Ring finger domain
zf-RING_11 PF17123 211 - 237 1.9e-08 RING-like zinc finger
zf-rbx1 PF12678 221 - 252 2e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 399, 463, 470
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 754
AciI CCGC 1 cut(s) 746
AclWI GGATC 2 cut(s) 397, 908
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 2 cut(s) 484, 866
AfiI CCNNNNNNNGG 3 cut(s) 89, 289, 615
AgsI TTSAA 4 cut(s) 439, 547, 557, 652
AhdI GACNNNNNGTC 2 cut(s) 329, 858
AjnI CCWGG 1 cut(s) 827
AluBI AGCT 4 cut(s) 113, 568, 668, 716
AluI AGCT 4 cut(s) 113, 568, 668, 716
Alw21I GWGCWC 2 cut(s) 115, 430
Alw26I GTCTC 2 cut(s) 337, 788
AlwI GGATC 2 cut(s) 397, 908
AoxI GGCC 3 cut(s) 280, 580, 830
ApeKI GCWGC 4 cut(s) 32, 350, 362, 713
AspS9I GGNCC 1 cut(s) 580
AsuC2I CCSGG 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 568
BanII GRGCYC 2 cut(s) 115, 261
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 115, 430
BbvI GCAGC 4 cut(s) 19, 362, 374, 725
BccI CCATC 3 cut(s) 68, 874, 891
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 829
BclI TGATCA 2 cut(s) 316, 811
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 337, 788
BfaI CTAG 3 cut(s) 129, 569, 776
BfmI CTRYAG 1 cut(s) 751
BfuAI ACCTGC 3 cut(s) 399, 463, 470
BisI GCNGC 4 cut(s) 33, 351, 363, 714
BlsI GCNGC 4 cut(s) 34, 352, 364, 715
Bme1390I CCNGG 2 cut(s) 584, 829
BmeRI GACNNNNNGTC 2 cut(s) 329, 858
BmgT120I GGNCC 1 cut(s) 580
BmrFI CCNGG 2 cut(s) 584, 829
BmsI GCATC 5 cut(s) 154, 208, 227, 666, 746
BmtI GCTAGC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 243, 275
BpmI CTGGAG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 584
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 289, 615
Bse1I ACTGG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 6 cut(s) 665, 700, 786, 855, 885, 902
BseLI CCNNNNNNNGG 3 cut(s) 89, 289, 615
BseMII CTCAG 2 cut(s) 213, 708
BseNI ACTGG 1 cut(s) 391
BseXI GCAGC 4 cut(s) 19, 362, 374, 725
BshFI GGCC 3 cut(s) 282, 582, 832
BsiHKAI GWGCWC 2 cut(s) 115, 430
BsiSI CCGG 1 cut(s) 583
BslFI GGGAC 2 cut(s) 430, 631
BslI CCNNNNNNNGG 3 cut(s) 89, 289, 615
BsmAI GTCTC 2 cut(s) 337, 788
BsmFI GGGAC 2 cut(s) 430, 631
BsnI GGCC 3 cut(s) 282, 582, 832
Bso31I GGTCTC 1 cut(s) 337
Bsp1286I GDGCHC 3 cut(s) 115, 261, 430
Bsp143I GATC 5 cut(s) 316, 389, 769, 811, 913
BspACI CCGC 1 cut(s) 746
BspANI GGCC 3 cut(s) 282, 582, 832
BspCNI CTCAG 2 cut(s) 214, 709
BspMI ACCTGC 3 cut(s) 399, 463, 470
BspOI GCTAGC 1 cut(s) 572
BspPI GGATC 2 cut(s) 397, 908
BspTNI GGTCTC 1 cut(s) 337
BsrBI CCGCTC 1 cut(s) 748
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 5 cut(s) 316, 389, 769, 811, 913
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 3 cut(s) 397, 421, 890
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 4 cut(s) 570, 735, 819, 907
BstDEI CTNAG 2 cut(s) 222, 717
BstF5I GGATG 6 cut(s) 665, 700, 786, 855, 885, 902
BstKTI GATC 5 cut(s) 319, 392, 772, 814, 916
BstMAI GTCTC 2 cut(s) 337, 788
BstMBI GATC 5 cut(s) 316, 389, 769, 811, 913
BstMWI GCNNNNNNNGC 5 cut(s) 38, 359, 685, 805, 814
BstNI CCWGG 1 cut(s) 829
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 582, 827
BstSFI CTRYAG 1 cut(s) 751
BstV1I GCAGC 4 cut(s) 19, 362, 374, 725
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
BsuRI GGCC 3 cut(s) 282, 582, 832
BtsCI GGATG 6 cut(s) 665, 700, 786, 855, 885, 902
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 3 cut(s) 399, 463, 470
Cac8I GCNNGC 4 cut(s) 570, 735, 819, 907
Cfr13I GGNCC 1 cut(s) 580
CseI GACGC 1 cut(s) 810
Csp6I GTAC 2 cut(s) 483, 865
CviAII CATG 2 cut(s) 741, 818
CviQI GTAC 2 cut(s) 483, 865
DdeI CTNAG 2 cut(s) 222, 717
DpnI GATC 5 cut(s) 318, 391, 771, 813, 915
DpnII GATC 5 cut(s) 316, 389, 769, 811, 913
DriI GACNNNNNGTC 2 cut(s) 329, 858
Eam1105I GACNNNNNGTC 2 cut(s) 329, 858
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 431
Eco147I AGGCCT 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 115, 261
Eco31I GGTCTC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 827
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 2 cut(s) 115, 261
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 2 cut(s) 744, 821
FaqI GGGAC 2 cut(s) 430, 631
FatI CATG 2 cut(s) 740, 817
FauNDI CATATG 1 cut(s) 507
FbaI TGATCA 2 cut(s) 316, 811
FblI GTMKAC 1 cut(s) 754
Fnu4HI GCNGC 4 cut(s) 33, 351, 363, 714
FokI GGATG 6 cut(s) 672, 687, 773, 862, 892, 909
FriOI GRGCYC 2 cut(s) 115, 261
Fsp4HI GCNGC 4 cut(s) 33, 351, 363, 714
FspBI CTAG 3 cut(s) 129, 569, 776
GluI GCNGC 4 cut(s) 33, 351, 363, 714
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 3 cut(s) 282, 582, 832
HapII CCGG 1 cut(s) 583
HgaI GACGC 1 cut(s) 810
Hin1II CATG 2 cut(s) 744, 821
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 2 cut(s) 557, 756
HpaI GTTAAC 1 cut(s) 295
HpaII CCGG 1 cut(s) 583
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 3 cut(s) 172, 295, 755
Hpy188I TCNGA 2 cut(s) 223, 879
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 172, 295, 755
HpyAV CCTTC 3 cut(s) 87, 608, 887
HpyCH4III ACNGT 3 cut(s) 397, 421, 890
HpyCH4V TGCA 7 cut(s) 218, 362, 479, 530, 592, 713, 737
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 359, 685, 805, 814
HpyF3I CTNAG 2 cut(s) 222, 717
Hsp92II CATG 2 cut(s) 744, 821
Ksp22I TGATCA 2 cut(s) 316, 811
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 5 cut(s) 316, 389, 769, 811, 913
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 4 cut(s) 19, 362, 374, 725
LweI GCATC 5 cut(s) 154, 208, 227, 666, 746
MaeI CTAG 3 cut(s) 129, 569, 776
MalI GATC 5 cut(s) 318, 391, 771, 813, 915
MbiI CCGCTC 1 cut(s) 748
MboI GATC 5 cut(s) 316, 389, 769, 811, 913
MboII GAAGA 1 cut(s) 656
MfeI CAATTG 2 cut(s) 153, 552
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 3 cut(s) 115, 261, 430
MluCI AATT 5 cut(s) 8, 153, 269, 374, 552
MlyI GAGTC 1 cut(s) 750
MnlI CCTC 3 cut(s) 58, 572, 835
MseI TTAA 3 cut(s) 294, 377, 870
MslI CAYNNNNRTG 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 1 cut(s) 583
MspR9I CCNGG 2 cut(s) 584, 829
MunI CAATTG 2 cut(s) 153, 552
MvaI CCWGG 1 cut(s) 829
MwoI GCNNNNNNNGC 5 cut(s) 38, 359, 685, 805, 814
NciI CCSGG 1 cut(s) 584
NdeI CATATG 1 cut(s) 507
NdeII GATC 5 cut(s) 316, 389, 769, 811, 913
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 2 cut(s) 744, 821
NspI RCATGY 1 cut(s) 821
PaeI GCATGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 282
PfeI GAWTC 1 cut(s) 557
PkrI GCNGC 4 cut(s) 34, 352, 364, 715
PleI GAGTC 1 cut(s) 750
PpsI GAGTC 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 827
PspGI CCWGG 1 cut(s) 827
PspPI GGNCC 1 cut(s) 580
PsuI RGATCY 1 cut(s) 913
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 2 cut(s) 484, 866
RsaNI GTAC 2 cut(s) 483, 865
RseI CAYNNNNRTG 1 cut(s) 848
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 3 cut(s) 294, 377, 870
SatI GCNGC 4 cut(s) 33, 351, 363, 714
Sau3AI GATC 5 cut(s) 316, 389, 769, 811, 913
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 1 cut(s) 750
ScrFI CCNGG 2 cut(s) 584, 829
SduI GDGCHC 3 cut(s) 115, 261, 430
SfaNI GCATC 5 cut(s) 154, 208, 227, 666, 746
SfcI CTRYAG 1 cut(s) 751
SmiMI CAYNNNNRTG 1 cut(s) 848
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
SphI GCATGC 1 cut(s) 821
Sse9I AATT 5 cut(s) 8, 153, 269, 374, 552
SseBI AGGCCT 1 cut(s) 282
SsiI CCGC 1 cut(s) 746
SspI AATATT 1 cut(s) 357
SspMI CTAG 3 cut(s) 129, 569, 776
SstI GAGCTC 1 cut(s) 115
StuI AGGCCT 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 582, 827
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 397, 421, 890
TaqI TCGA 1 cut(s) 759
TasI AATT 5 cut(s) 8, 153, 269, 374, 552
TatI WGTACW 1 cut(s) 864
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 3 cut(s) 294, 377, 870
Tru9I TTAA 3 cut(s) 294, 377, 870
TscAI CASTG 1 cut(s) 294
TseI GCWGC 4 cut(s) 32, 350, 362, 713
TspDTI ATGAA 2 cut(s) 207, 686
TspRI CASTG 1 cut(s) 294
XceI RCATGY 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 754
XspI CTAG 3 cut(s) 129, 569, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.