Rh4AG117300

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000747
Physical Location & Seq
Reverse (-)
25243532 .. 25245388
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG117300.1

Sequence Viewer

Length: 312 bp
ATGAGAAGCCGACGCCTCGTCCTCTGCAATAGAAACATTGAACGCTTCAAAATACCGAACTTGGGGACAATTCAACCCTTGATTGAATTCGTAAAGATTCTAGTTATCGAAAAGAGCTCACCACTGTCGTCATCGTCGAGGGAGATGACATTGAGAGGCTATATGCGGCTGTATGTGACTGCGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTAAGAAAACTAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGATCCAATAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

10.8

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AciI CCGC 2 cut(s) 166, 182
AclWI GGATC 2 cut(s) 290, 303
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 5 cut(s) 41, 49, 74, 86, 199
AhdI GACNNNNNGTC 1 cut(s) 17
AluBI AGCT 3 cut(s) 117, 191, 305
AluI AGCT 3 cut(s) 117, 191, 305
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 2 cut(s) 290, 303
ApeKI GCWGC 3 cut(s) 188, 236, 305
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 111
BamHI GGATCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 200, 223, 292
BfaI CTAG 2 cut(s) 101, 252
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 167, 189, 237, 306
BlsI GCNGC 4 cut(s) 168, 190, 238, 307
BmeRI GACNNNNNGTC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 200, 223, 292
BsiHKAI GWGCWC 1 cut(s) 119
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 2 cut(s) 166, 182
BspLI GGNNCC 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 2 cut(s) 290, 303
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 188, 233
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 200, 223, 292
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 122
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 234
CseI GACGC 1 cut(s) 21
CviJI RGCY 8 cut(s) 9, 117, 159, 169, 191, 236, 272, 305
CviKI_1 RGCY 8 cut(s) 9, 117, 159, 169, 191, 236, 272, 305
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DriI GACNNNNNGTC 1 cut(s) 17
Eam1105I GACNNNNNGTC 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 119
FaiI YATR 6 cut(s) 162, 164, 174, 267, 269, 310
FaqI GGGAC 1 cut(s) 79
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 167, 189, 237, 306
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 167, 189, 237, 306
FspBI CTAG 2 cut(s) 101, 252
GluI GCNGC 4 cut(s) 167, 189, 237, 306
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 13
HinfI GANTC 1 cut(s) 97
HphI GGTGA 1 cut(s) 111
Hpy99I CGWCG 2 cut(s) 15, 139
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 27, 239, 290, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 233
Hsp92I GRCGYC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 3 cut(s) 213, 218, 225
Lsp1109I GCAGC 3 cut(s) 200, 223, 292
MaeI CTAG 2 cut(s) 101, 252
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 69, 86
MnlI CCTC 4 cut(s) 26, 32, 132, 149
MwoI GCNNNNNNNGC 2 cut(s) 188, 233
NdeI CATATG 1 cut(s) 267
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 4 cut(s) 168, 190, 238, 307
Psp124BI GAGCTC 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 297
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 295
SacI GAGCTC 1 cut(s) 119
SatI GCNGC 4 cut(s) 167, 189, 237, 306
Sau3AI GATC 1 cut(s) 295
SduI GDGCHC 1 cut(s) 119
SetI ASST 5 cut(s) 119, 193, 219, 244, 307
SfcI CTRYAG 1 cut(s) 237
Sse9I AATT 2 cut(s) 69, 86
SsiI CCGC 2 cut(s) 166, 182
SspMI CTAG 2 cut(s) 101, 252
SstI GAGCTC 1 cut(s) 119
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 108, 137
TasI AATT 2 cut(s) 69, 86
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 97
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 3 cut(s) 188, 236, 305
Tsp45I GTSAC 1 cut(s) 175
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 86
XspI CTAG 2 cut(s) 101, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.