Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

70174119 .. 70175925

Gene Structure 1807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG526500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTTTGCCAGTTTTGGATGGATAAAGATGGCTCTCCTAACAATGGAAGGGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTAGTATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATTGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTCACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

79

Amino Acids

8.85

Weight (kDa)

9.25

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	232
BanII	GRGCYC	2 cut(s)	70, 213
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	2 cut(s)	13, 23
BceAI	ACGGC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	109, 182
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpuEI	CTTGAG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	70, 213
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	24
CviJI	RGCY	5 cut(s)	33, 68, 134, 211, 234
CviKI_1	RGCY	5 cut(s)	33, 68, 134, 211, 234
DdeI	CTNAG	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	70, 213
Eco53kI	GAGCTC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	68
EcoT38I	GRGCYC	2 cut(s)	70, 213
FaiI	YATR	2 cut(s)	57, 89
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	2 cut(s)	70, 213
FspBI	CTAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	95, 173
HpyF3I	CTNAG	1 cut(s)	177
LpnPI	CCDG	1 cut(s)	23
LweI	GCATC	2 cut(s)	109, 182
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	184
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	70, 213
MluCI	AATT	2 cut(s)	108, 221
MseI	TTAA	1 cut(s)	238
MunI	CAATTG	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	70, 213
SetI	ASST	2 cut(s)	70, 103
SfaNI	GCATC	2 cut(s)	109, 182
SgeI	CNNG	7 cut(s)	22, 83, 96, 128, 136, 142, 211
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	108, 221
SseBI	AGGCCT	1 cut(s)	234
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	2 cut(s)	108, 221
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	162
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.