RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 83 |
| AclWI | GGATC | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 97 |
| AgsI | TTSAA | 2 cut(s) | 329, 341 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 299, 331 |
| AluBI | AGCT | 1 cut(s) | 50 |
| AluI | AGCT | 1 cut(s) | 50 |
| Alw26I | GTCTC | 1 cut(s) | 273 |
| AlwI | GGATC | 1 cut(s) | 52 |
| ApeKI | GCWGC | 4 cut(s) | 5, 17, 63, 89 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 114, 314 |
| BbsI | GAAGAC | 1 cut(s) | 306 |
| BbvI | GCAGC | 4 cut(s) | 17, 29, 75, 76 |
| BcoDI | GTCTC | 1 cut(s) | 273 |
| BfmI | CTRYAG | 1 cut(s) | 90 |
| BfuAI | ACCTGC | 1 cut(s) | 83 |
| BisI | GCNGC | 4 cut(s) | 6, 18, 64, 90 |
| BlsI | GCNGC | 4 cut(s) | 7, 19, 65, 91 |
| BpiI | GAAGAC | 1 cut(s) | 306 |
| BpuEI | CTTGAG | 1 cut(s) | 257 |
| BsaI | GGTCTC | 1 cut(s) | 273 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 299, 329 |
| BseXI | GCAGC | 4 cut(s) | 17, 29, 75, 76 |
| BsmAI | GTCTC | 1 cut(s) | 273 |
| Bso31I | GGTCTC | 1 cut(s) | 273 |
| Bsp143I | GATC | 1 cut(s) | 44 |
| BspMAI | CTGCAG | 1 cut(s) | 94 |
| BspMI | ACCTGC | 1 cut(s) | 83 |
| BspPI | GGATC | 1 cut(s) | 52 |
| BspTNI | GGTCTC | 1 cut(s) | 273 |
| BssMI | GATC | 1 cut(s) | 44 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstKTI | GATC | 1 cut(s) | 47 |
| BstMAI | GTCTC | 1 cut(s) | 273 |
| BstMBI | GATC | 1 cut(s) | 44 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 86 |
| BstSFI | CTRYAG | 1 cut(s) | 90 |
| BstV1I | GCAGC | 4 cut(s) | 17, 29, 75, 76 |
| BstV2I | GAAGAC | 1 cut(s) | 306 |
| BveI | ACCTGC | 1 cut(s) | 83 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| Csp6I | GTAC | 1 cut(s) | 96 |
| CviAII | CATG | 1 cut(s) | 172 |
| CviJI | RGCY | 4 cut(s) | 50, 89, 125, 168 |
| CviKI_1 | RGCY | 4 cut(s) | 50, 89, 125, 168 |
| CviQI | GTAC | 1 cut(s) | 96 |
| DpnI | GATC | 1 cut(s) | 46 |
| DpnII | GATC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 1 cut(s) | 273 |
| FaeI | CATG | 1 cut(s) | 175 |
| FaiI | YATR | 3 cut(s) | 120, 122, 173 |
| FatI | CATG | 1 cut(s) | 171 |
| FauNDI | CATATG | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 18, 64, 90 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 18, 64, 90 |
| GluI | GCNGC | 4 cut(s) | 6, 18, 64, 90 |
| Hin1II | CATG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 4 cut(s) | 177, 194, 233, 239 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 92, 143 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 86 |
| Hsp92II | CATG | 1 cut(s) | 175 |
| Kzo9I | GATC | 1 cut(s) | 44 |
| LpnPI | CCDG | 4 cut(s) | 66, 71, 78, 118 |
| Lsp1109I | GCAGC | 4 cut(s) | 17, 29, 75, 76 |
| MalI | GATC | 1 cut(s) | 46 |
| MboI | GATC | 1 cut(s) | 44 |
| MboII | GAAGA | 6 cut(s) | 187, 202, 220, 227, 242, 311 |
| MluCI | AATT | 2 cut(s) | 29, 329 |
| MnlI | CCTC | 2 cut(s) | 245, 338 |
| MroXI | GAANNNNTTC | 2 cut(s) | 114, 314 |
| MseI | TTAA | 1 cut(s) | 32 |
| MspA1I | CMGCKG | 1 cut(s) | 50 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 86 |
| NdeI | CATATG | 1 cut(s) | 120 |
| NdeII | GATC | 1 cut(s) | 44 |
| NlaIII | CATG | 1 cut(s) | 175 |
| PdmI | GAANNNNTTC | 2 cut(s) | 114, 314 |
| PkrI | GCNGC | 4 cut(s) | 7, 19, 65, 91 |
| PstI | CTGCAG | 1 cut(s) | 94 |
| PvuII | CAGCTG | 1 cut(s) | 50 |
| RsaI | GTAC | 1 cut(s) | 97 |
| RsaNI | GTAC | 1 cut(s) | 96 |
| SaqAI | TTAA | 1 cut(s) | 32 |
| SatI | GCNGC | 4 cut(s) | 6, 18, 64, 90 |
| Sau3AI | GATC | 1 cut(s) | 44 |
| SetI | ASST | 5 cut(s) | 52, 72, 97, 150, 256 |
| SfcI | CTRYAG | 1 cut(s) | 90 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| Sse9I | AATT | 2 cut(s) | 29, 329 |
| SspI | AATATT | 1 cut(s) | 12 |
| TasI | AATT | 2 cut(s) | 29, 329 |
| Tru1I | TTAA | 1 cut(s) | 32 |
| Tru9I | TTAA | 1 cut(s) | 32 |
| TseI | GCWGC | 4 cut(s) | 5, 17, 63, 89 |
| TspDTI | ATGAA | 2 cut(s) | 107, 188 |
| XmnI | GAANNNNTTC | 2 cut(s) | 114, 314 |