RchiOBHm_Chr5g0076531

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000747
Physical Location & Seq
Forward (+)
82193381 .. 82194528
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35118

Sequence Viewer

Length: 327 bp
ATGCCAAAGCTCTTGAAATCGCACTCTTGTTATCGTTATGTACTCACATTGCTTTCCTCTATCTTGGAATTGAAAGAAGTAAGAATGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAATAGAACTTATGACGATATTCCAGGGTCTTTGAGTATGATAAAGATGGATCTCCTAACAATGGAAGGGTGTATATATGTCAATAGAGCTCAAGATGTAGTGTCTAGTGTGTTTGCAAAAGATTTAGCAATTGGACAAGATGCAGTGAACAAGGCTAAAGCATTTGATGGAAAGCATCAGTTGATAGCAAGTGATCTGAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

108

Amino Acids

11.95

Weight (kDa)

7.7

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 177
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 16, 73
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 10, 209
AluI AGCT 2 cut(s) 10, 209
Alw21I GWGCWC 1 cut(s) 211
AlwI GGATC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 160, 281
BciT130I CCWGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 250, 304
BpuEI CTTGAG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 169, 313
BspCNI CTCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 2 cut(s) 169, 313
Bst2UI CCWGG 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 2 cut(s) 172, 316
BstMBI GATC 2 cut(s) 169, 313
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
Csp6I GTAC 1 cut(s) 41
CviJI RGCY 3 cut(s) 10, 209, 275
CviKI_1 RGCY 3 cut(s) 10, 209, 275
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 317
DpnI GATC 2 cut(s) 171, 315
DpnII GATC 2 cut(s) 169, 313
Ecl136II GAGCTC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 211
FaiI YATR 6 cut(s) 39, 132, 158, 194, 196, 198
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 225
GluI GCNGC 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 2 cut(s) 13, 212
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 236, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
HpyF3I CTNAG 1 cut(s) 317
Kzo9I GATC 2 cut(s) 169, 313
LpnPI CCDG 3 cut(s) 126, 129, 156
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 250, 304
MaeI CTAG 1 cut(s) 225
MalI GATC 2 cut(s) 171, 315
MboI GATC 2 cut(s) 169, 313
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 68, 249
MnlI CCTC 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NdeII GATC 2 cut(s) 169, 313
PkrI GCNGC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SacI GAGCTC 1 cut(s) 211
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 169, 313
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 211
SetI ASST 2 cut(s) 12, 211
SfaNI GCATC 2 cut(s) 250, 304
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 2 cut(s) 68, 249
SspMI CTAG 1 cut(s) 225
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 142
TasI AATT 2 cut(s) 68, 249
TatI WGTACW 1 cut(s) 40
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 107
TspRI CASTG 1 cut(s) 270
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.