Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000747

Physical Location & Seq

Genomic Coordinates Reverse (-)

20269608 .. 20274230

Gene Structure 4623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28380.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGACGAGAACTGTGCAAGTAAAGCAACTATCAGATCTAGCTAGCGAGAGAGAGATTCATGAGTTCTTTTCCTTTTCTGGAGAGATCGAGCGCATTCAGATCCAACGTGAGCCTGCACAATCAAAGACTGCATTTGTTACTTTCAAGGATGCCAAAGCTCTTGAAATCGCACTTTTGTTGTCGGGTGCAACAATGGTTGATCAGATTGTGACCATATCTCCTGTTGAAAATTATGTACCAATTGATGAGACACAGGAAATAAGAATGGTGGAAAGTGCTGTTTGTGCTGCCCCTGCTGAAAATGTTTCACCAAATGCTGAGGATAAAAATAGCTCTCCTAACAATGGAAGAGTGTATGTAAATAGAGCTCAAGATGTAGTGTCTTGTATGTTTGCAAAAGGTTCAGCGATTGGACAAGATGCCGTTAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGACAGCAAGTGCATCTGAGAAAGTGACTTCCTTTGACAAGAGAGTGGGGCTCACTGAGAAATTGACAGTAGGCCTTTCAGTGGTTAATGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCGGCTATATTTGCAGCAGAGAGAAAACTAAATGATACAGGATCAGCTGTCAAAACAAGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

24.28

Weight (kDa)

6.2

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32450
fragaria_vesca	FvH4_1g25684 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380 FvH4_1g28380
malus_domestica	MD11G1185100.v1.1 MD12G1007200.v1.1
prunus_persica	Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1 Prupe.7G008000_v2.0.a1
pyrus_communis	pycom01g08160 pycom07g12190
rosa_chinensis	RchiOBHm_Chr1g0313801 RchiOBHm_Chr1g0341411 RchiOBHm_Chr1g0378871 RchiOBHm_Chr3g0496611 RchiOBHm_Chr5g0046611 RchiOBHm_Chr5g0076531 RchiOBHm_Chr5g0077261 RchiOBHm_Chr6g0266381 RchiOBHm_Chr7g0210931
rosa_laevigata	RLG00000002209 RLG00000022514 RLG00000030654 RLG00000033625
rosa_multiflora	Rmu_sc0001647.1_g000010 Rmu_sc0005010.1_g000006 Rmu_ssc0000022.1_g000017 Rmu_ssc0000197.1_g000039
rosa_roxburghii	Rroxscaffold_2G00110930 Rroxscaffold_4G00321400 Rroxscaffold_5G00373640 Rroxscaffold_6G00388880 Rroxscaffold_6G00389360
rosa_rugosa	Rorug01G0251700 Rorug02G0202500 Rorug02G0268400 Rorug03G0284900 Rorug03G0340100 Rorug04G0449700 Rorug05G0292200 Rorug05G0366600 Rorug06G0053700
rosa_samantha	Rh1AG006600 Rh2BG556400 Rh2CG526400 Rh2CG526500 Rh3AG330300 Rh3BG366000 Rh3DG366200 Rh4AG014800 Rh4AG117300 Rh5AG194500 Rh5BG318800 Rh6BG260800 Rh7AG255200 Rh7CG271800
rosa_wichuraiana	Rw1G012940 Rw2G020140 Rw2G026630 Rw3G028910 Rw5G031890 Rw7G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	654
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	2 cut(s)	97, 652
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	347, 544
AgsI	TTSAA	3 cut(s)	148, 167, 230
AhdI	GACNNNNNGTC	1 cut(s)	584
AluBI	AGCT	5 cut(s)	44, 161, 336, 371, 650
AluI	AGCT	5 cut(s)	44, 161, 336, 371, 650
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	245, 592
AlwI	GGATC	2 cut(s)	97, 652
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	2 cut(s)	290, 617
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	303
AsuNHI	GCTAGC	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	373, 516
Bbv12I	GWGCWC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	277, 629
BceAI	ACGGC	1 cut(s)	410
BcgI	CGANNNNNNTGC	1 cut(s)	32
BclI	TGATCA	2 cut(s)	202, 571
BcoDI	GTCTC	2 cut(s)	245, 592
BfaI	CTAG	2 cut(s)	41, 45
BfuAI	ACCTGC	1 cut(s)	654
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	3 cut(s)	291, 606, 618
BlsI	GCNGC	3 cut(s)	292, 607, 619
BmeRI	GACNNNNNGTC	1 cut(s)	584
BmsI	GCATC	4 cut(s)	142, 412, 466, 485
BmtI	GCTAGC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	498, 530
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	592
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 544
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	347, 544
BseMII	CTCAG	4 cut(s)	312, 471, 510, 603
BseXI	GCAGC	2 cut(s)	277, 629
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	347, 544
BsmAI	GTCTC	2 cut(s)	245, 592
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	537
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	373, 516
Bsp143I	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	4 cut(s)	313, 472, 511, 602
BspHI	TCATGA	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	654
BspOI	GCTAGC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	97, 652
BspTNI	GGTCTC	1 cut(s)	592
BssMI	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
Bst4CI	ACNGT	2 cut(s)	16, 532
Bst6I	CTCTTC	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	46, 117
BstDEI	CTNAG	4 cut(s)	321, 480, 519, 589
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	6 cut(s)	40, 90, 105, 205, 574, 647
BstMAI	GTCTC	2 cut(s)	245, 592
BstMBI	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 287, 296, 614
BstV1I	GCAGC	2 cut(s)	277, 629
BstX2I	RGATCY	2 cut(s)	37, 102
BstYI	RGATCY	2 cut(s)	37, 102
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	516, 549
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	46, 117
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	62
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	4 cut(s)	321, 480, 519, 589
DpnI	GATC	6 cut(s)	39, 89, 104, 204, 573, 646
DpnII	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
DriI	GACNNNNNGTC	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	346
Eam1105I	GACNNNNNGTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	371
Eco147I	AGGCCT	1 cut(s)	537
Eco24I	GRGCYC	2 cut(s)	373, 516
Eco31I	GGTCTC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	371
EcoT38I	GRGCYC	2 cut(s)	373, 516
FaeI	CATG	1 cut(s)	65
FaiI	YATR	6 cut(s)	63, 218, 237, 360, 392, 611
FatI	CATG	1 cut(s)	61
FbaI	TGATCA	2 cut(s)	202, 571
Fnu4HI	GCNGC	3 cut(s)	291, 606, 618
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	373, 516
Fsp4HI	GCNGC	3 cut(s)	291, 606, 618
FspBI	CTAG	2 cut(s)	41, 45
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	291, 606, 618
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	537
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	2 cut(s)	430, 465
HindII	GTYRAC	2 cut(s)	430, 465
HinfI	GANTC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	430
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	430, 465
Hpy188I	TCNGA	5 cut(s)	37, 102, 207, 481, 592
Hpy188III	TCNNGA	4 cut(s)	62, 81, 164, 374
Hpy8I	GTNNAC	2 cut(s)	430, 465
HpyCH4III	ACNGT	2 cut(s)	16, 532
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	8 cut(s)	4, 19, 119, 134, 191, 398, 476, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 287, 296, 614
HpyF3I	CTNAG	4 cut(s)	321, 480, 519, 589
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	2 cut(s)	202, 571
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
LpnPI	CCDG	8 cut(s)	66, 129, 237, 242, 309, 569, 627, 649
Lsp1109I	GCAGC	2 cut(s)	277, 629
LweI	GCATC	4 cut(s)	142, 412, 466, 485
MaeI	CTAG	2 cut(s)	41, 45
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	139, 211, 487
MalI	GATC	6 cut(s)	39, 89, 104, 204, 573, 646
MboI	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
MboII	GAAGA	1 cut(s)	363
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	2 cut(s)	37, 102
MhlI	GDGCHC	2 cut(s)	373, 516
MluCI	AATT	3 cut(s)	232, 243, 524
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	316
MseI	TTAA	2 cut(s)	429, 549
MspA1I	CMGCKG	1 cut(s)	650
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	25, 287, 296, 614
NdeII	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	211, 487
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	537
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	292, 607, 619
Psp124BI	GAGCTC	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	37, 102
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	429, 549
SatI	GCNGC	3 cut(s)	291, 606, 618
Sau3AI	GATC	6 cut(s)	37, 87, 102, 202, 571, 644
SduI	GDGCHC	2 cut(s)	373, 516
SetI	ASST	9 cut(s)	46, 112, 163, 338, 373, 406, 588, 652, 668
SfaNI	GCATC	4 cut(s)	142, 412, 466, 485
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	3 cut(s)	232, 243, 524
SseBI	AGGCCT	1 cut(s)	537
SsiI	CCGC	1 cut(s)	605
SspMI	CTAG	2 cut(s)	41, 45
SstI	GAGCTC	1 cut(s)	373
StuI	AGGCCT	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	16, 532
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	232, 243, 524
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	429, 549
Tru9I	TTAA	2 cut(s)	429, 549
TscAI	CASTG	2 cut(s)	523, 549
TseFI	GTSAC	2 cut(s)	211, 487
TseI	GCWGC	2 cut(s)	290, 617
Tsp45I	GTSAC	2 cut(s)	211, 487
TspDTI	ATGAA	2 cut(s)	50, 465
TspRI	CASTG	2 cut(s)	523, 549
XspI	CTAG	2 cut(s)	41, 45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.