Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Forward (+)

21596040 .. 21598438

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28582.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAAGATTTAGGTGAAGCTAGGTATGTGCTTGGTATTGAGATTAAGAGAAATAGAGCCAGCAGAGTTTTGGGATTGTCACAGGAGGGATATGTCAGGAAGGTTCTGAAAAGATTTGATATGGAGACTTGTTCAGCTAATGATGTTCCAATGACAAAAGGTGATAAGCTAAACAAGGATCAGTGTCCTAAGACTGATTTAGAAAAGAAGAACATGGAGGGGCCAATGAAATATTTTTGTGATAATTCTGCTGCTGTGTACTTCACTAAAAATAATAAGAGGTCCAATAATTCTAAGCATTTGGGACTTAAGTATTACAGTGTGAGGGAAAAGGTGAAACATGGTGAGATTGAAGTTCTGCAAATTGGCACTTTATCTCAGCTTGCAGACCCTTTTACCAAAGCCTTGACAGCAGTGAGTTTTGAAGAACATGCAAGGAGCATTGAGGTGGTGGCCGTGGTGGGGACAAAGAGGCGGAACCATAGATTGCGGGAGGGGTCAGCCATTACATCAGTGGTTCTGACGTCGTCGGGTTTGTTTGACGGGGGTGTCTTGGAATCGAAAACTTTCATGATAGGGCGGTTTACGTTGCCGTTGGAGCGGCGAGCGGTATTGAGGACGAAGGTGAGGATGAAGATGAAGAACCGGAGCGTCCATGGAATTAGGTTCGGCGATGATGGAGGGTTTCGGGTCATCTTTGTTGTTTCGATCTCCGTCTTTGTGTGCTTGTCGGCAAAGTACGTTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.18

Weight (kDa)

9.88

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	548
AatII	GACGTC	1 cut(s)	527
AccBSI	CCGCTC	2 cut(s)	601, 608
AciI	CCGC	5 cut(s)	475, 490, 580, 601, 608
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	524
AfaI	GTAC	2 cut(s)	260, 740
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	353, 425
AluBI	AGCT	4 cut(s)	20, 137, 169, 382
AluI	AGCT	4 cut(s)	20, 137, 169, 382
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	221, 453
ApeKI	GCWGC	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	566
AspS9I	GGNCC	2 cut(s)	221, 282
AsuHPI	GGTGA	5 cut(s)	26, 173, 346, 356, 637
AvaII	GGWCC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	671
BceAI	ACGGC	2 cut(s)	440, 577
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	21, 751
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	252, 602
BlsI	GCNGC	2 cut(s)	253, 603
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	221, 282
BmiI	GGNNCC	2 cut(s)	222, 479
BsaHI	GRCGYC	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	456, 655
BsaWI	WCCGGW	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	456, 655
BseGI	GGATG	1 cut(s)	636
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	223, 455
BsiSI	CCGG	1 cut(s)	646
BslFI	GGGAC	2 cut(s)	318, 478
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	318, 478
BsnI	GGCC	2 cut(s)	223, 455
Bsp143I	GATC	2 cut(s)	178, 708
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	5 cut(s)	475, 490, 580, 601, 608
BspANI	GGCC	2 cut(s)	223, 455
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	222, 479
BspPI	GGATC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	308
BsrBI	CCGCTC	2 cut(s)	601, 608
BssECI	CCNNGG	2 cut(s)	456, 655
BssMI	GATC	2 cut(s)	178, 708
BssNI	GRCGYC	1 cut(s)	524
BssT1I	CCWWGG	1 cut(s)	655
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	524
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	61, 384, 606
BstDEI	CTNAG	3 cut(s)	189, 294, 378
BstDSI	CCRYGG	2 cut(s)	456, 655
BstF5I	GGATG	1 cut(s)	636
BstKTI	GATC	2 cut(s)	181, 711
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	178, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 598
BstNSI	RCATGY	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	223, 455
BtgI	CCRYGG	2 cut(s)	456, 655
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	636
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	4 cut(s)	188, 325, 420, 519
Cac8I	GCNNGC	3 cut(s)	61, 384, 606
CciI	TCATGA	1 cut(s)	570
Cfr13I	GGNCC	2 cut(s)	221, 282
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	259, 739
CviAII	CATG	5 cut(s)	214, 341, 431, 571, 656
CviJI	RGCY	9 cut(s)	20, 59, 137, 169, 223, 382, 404, 455, 503
CviKI_1	RGCY	9 cut(s)	20, 59, 137, 169, 223, 382, 404, 455, 503
CviQI	GTAC	2 cut(s)	259, 739
DdeI	CTNAG	3 cut(s)	189, 294, 378
DpnI	GATC	2 cut(s)	180, 710
DpnII	GATC	2 cut(s)	178, 708
DrdI	GACNNNNNNGTC	1 cut(s)	548
DseDI	GACNNNNNNGTC	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	5 cut(s)	217, 344, 434, 574, 659
FaiI	YATR	9 cut(s)	27, 93, 122, 215, 342, 432, 483, 572, 657
FaqI	GGGAC	2 cut(s)	318, 478
FatI	CATG	5 cut(s)	213, 340, 430, 570, 655
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	252, 602
FokI	GGATG	1 cut(s)	643
Fsp4HI	GCNGC	2 cut(s)	252, 602
FspBI	CTAG	2 cut(s)	21, 751
GluI	GCNGC	2 cut(s)	252, 602
HaeIII	GGCC	2 cut(s)	223, 455
HapII	CCGG	1 cut(s)	646
HgaI	GACGC	1 cut(s)	640
Hin1I	GRCGYC	1 cut(s)	524
Hin1II	CATG	5 cut(s)	217, 344, 434, 574, 659
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	5 cut(s)	26, 173, 346, 356, 637
Hpy166II	GTNNAC	2 cut(s)	259, 585
Hpy188I	TCNGA	2 cut(s)	108, 522
Hpy188III	TCNNGA	2 cut(s)	97, 571
Hpy8I	GTNNAC	2 cut(s)	259, 585
Hpy99I	CGWCG	2 cut(s)	529, 532
HpyAV	CCTTC	2 cut(s)	94, 616
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	3 cut(s)	524, 587, 741
HpyCH4V	TGCA	3 cut(s)	361, 386, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 598
HpyF3I	CTNAG	3 cut(s)	189, 294, 378
HpySE526I	ACGT	3 cut(s)	524, 587, 741
Hsp92I	GRCGYC	1 cut(s)	524
Hsp92II	CATG	5 cut(s)	217, 344, 434, 574, 659
Kzo9I	GATC	2 cut(s)	178, 708
LmnI	GCTCC	3 cut(s)	438, 598, 648
LpnPI	CCDG	4 cut(s)	68, 73, 82, 659
Lsp1109I	GCAGC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	21, 751
MaeII	ACGT	3 cut(s)	524, 587, 741
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	2 cut(s)	180, 710
MbiI	CCGCTC	2 cut(s)	601, 608
MboI	GATC	2 cut(s)	178, 708
MboII	GAAGA	4 cut(s)	220, 437, 646, 652
MluCI	AATT	4 cut(s)	244, 289, 363, 660
MmeI	TCCRAC	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	2 cut(s)	45, 309
MslI	CAYNNNNRTG	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	2 cut(s)	410, 598
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	2 cut(s)	178, 708
NlaIII	CATG	5 cut(s)	217, 344, 434, 574, 659
NlaIV	GGNNCC	2 cut(s)	222, 479
NmuCI	GTSAC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	434
PagI	TCATGA	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	253, 603
PspN4I	GGNNCC	2 cut(s)	222, 479
PspPI	GGNCC	2 cut(s)	221, 282
PsyI	GACNNNGTC	1 cut(s)	526
RsaI	GTAC	2 cut(s)	260, 740
RsaNI	GTAC	2 cut(s)	259, 739
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	45, 309
SatI	GCNGC	2 cut(s)	252, 602
Sau3AI	GATC	2 cut(s)	178, 708
Sau96I	GGNCC	2 cut(s)	221, 282
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	4 cut(s)	244, 289, 363, 660
SsiI	CCGC	5 cut(s)	475, 490, 580, 601, 608
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	2 cut(s)	21, 751
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	3 cut(s)	527, 590, 744
TaqI	TCGA	2 cut(s)	560, 707
TasI	AATT	4 cut(s)	244, 289, 363, 660
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	45, 309
Tru9I	TTAA	2 cut(s)	45, 309
TscAI	CASTG	4 cut(s)	188, 325, 420, 519
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	5 cut(s)	17, 242, 559, 647, 653
TspGWI	ACGGA	1 cut(s)	703
TspRI	CASTG	4 cut(s)	188, 325, 420, 519
Tth111I	GACNNNGTC	1 cut(s)	526
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	282
XceI	RCATGY	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 511
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	2 cut(s)	21, 751
ZraI	GACGTC	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.