Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

34968391 .. 34969709

Gene Structure 1319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTAGGCTGCAAGTGGGTCTTTAAAACCAAGACTGATGCAAGTGGCAACATAGAGAGATACAAGGCAAGGCTGGTCGCAAAGGGCTTCACACAAAGGCAGGGAATAGACTACACAGAAACGTTCTTACCAGTTTCATCAAAGGATTCCTTGAGAGTTGTCATGGCCTTAGTAGCTCACTACAACTTGGAGCTACATCAAATGGATGTCAAGACAGCGTTTTTGAATGGAGAATTAGTGGAGGACATTTATATGATGCAGCCACCAGGTTTTGTTGAAAAGGGGAAGGAGCATATGGTATGCAAACTCAGAAAGTCTATCTACGGCCTCAAGCAAGCTTCAAGGCAATGGTATCTCAAATTTGATGAGATAATTTCTGATTTTGGTTTCGTTGAAAACAAGATGGATGAGTGCATTTACCTAAAGGTCAGTGGTTCAAAATTCATTATTTTGGTCCTTTATGTTGATGATATACTTTTAGCGAGTAGTGACATGACTTTATTGAAAGATACAAAAGATATGTTGTCTCATAGTTTTGAAATGAAAGACCTGGGGGATGCTTCTTATGTTCTTGGTCTTGAGATCATAAGGGACAGATCAAGATCATTTTTGGAATTGTCACAGAAGGCTTACATTGAACGTGTGTTGAAGAGATTTAATATGCAAAAATGTTCTAGTGGTGAAGTTCCTATAGGGAAAGGAGACAAGTTCAGTAAAGAACAGTGCCCTAGAAATGAATTGGAGAAGAAATCAATGCAGGATAAGCCTTATGCATCTTTAGTTGGGAGCTTAATGTATGCACAAGACCGGACTTGGTTTTTGCTGTGGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2

Protein Analysis

278

Amino Acids

32.19

Weight (kDa)

8.42

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 231	6.5e-74	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	359, 440
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	9 cut(s)	226, 278, 342, 395, 438, 505, 539, 638, 649
AjnI	CCWGG	2 cut(s)	265, 549
AluBI	AGCT	4 cut(s)	176, 193, 338, 789
AluI	AGCT	4 cut(s)	176, 193, 338, 789
Alw26I	GTCTC	2 cut(s)	531, 696
AoxI	GGCC	2 cut(s)	165, 325
ApeKI	GCWGC	2 cut(s)	9, 259
ApoI	RAATTY	2 cut(s)	359, 440
ArsI	GACNNNNNNTTYG	4 cut(s)	205, 237, 802, 834
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	267, 551
BcoDI	GTCTC	2 cut(s)	531, 696
BfaI	CTAG	3 cut(s)	675, 729, 835
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	2 cut(s)	10, 260
BlsI	GCNGC	2 cut(s)	11, 261
Bme1390I	CCNGG	2 cut(s)	267, 551
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	267, 551
BmsI	GCATC	4 cut(s)	28, 246, 547, 782
BpuEI	CTTGAG	3 cut(s)	172, 314, 599
BsaBI	GATNNNNATC	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	550
BsaWI	WCCGGW	1 cut(s)	807
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	267, 551
BseDI	CCNNGG	1 cut(s)	550
BseGI	GGATG	3 cut(s)	211, 412, 562
BseJI	GATNNNNATC	1 cut(s)	601
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	2 cut(s)	167, 327
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	531, 696
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	167, 327
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp143I	GATC	3 cut(s)	582, 596, 602
BspANI	GGCC	2 cut(s)	167, 327
BspCNI	CTCAG	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	3 cut(s)	582, 596, 602
Bst2UI	CCWGG	2 cut(s)	267, 551
Bst4CI	ACNGT	1 cut(s)	723
Bst6I	CTCTTC	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	169, 308
BstF5I	GGATG	3 cut(s)	211, 412, 562
BstKTI	GATC	3 cut(s)	585, 599, 605
BstMAI	GTCTC	2 cut(s)	531, 696
BstMBI	GATC	3 cut(s)	582, 596, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 763
BstNI	CCWGG	2 cut(s)	267, 551
BstSCI	CCNGG	2 cut(s)	265, 549
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	167, 327
BtsCI	GGATG	3 cut(s)	211, 412, 562
BtsIMutI	CAGTG	2 cut(s)	436, 728
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	454
CsiI	ACCWGGT	1 cut(s)	265
CviAII	CATG	2 cut(s)	163, 493
DdeI	CTNAG	2 cut(s)	169, 308
DpnI	GATC	3 cut(s)	584, 598, 604
DpnII	GATC	3 cut(s)	582, 596, 602
DraI	TTTAAA	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	265, 549
EcoT22I	ATGCAT	1 cut(s)	775
FaeI	CATG	2 cut(s)	166, 496
FalI	AAGNNNNNCTT	3 cut(s)	37, 134, 166
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	162, 492
FauNDI	CATATG	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	10, 260
FokI	GGATG	3 cut(s)	218, 419, 569
Fsp4HI	GCNGC	2 cut(s)	10, 260
FspBI	CTAG	3 cut(s)	675, 729, 835
GluI	GCNGC	2 cut(s)	10, 260
HaeIII	GGCC	2 cut(s)	167, 327
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	2 cut(s)	166, 496
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	1 cut(s)	692
Hpy188I	TCNGA	2 cut(s)	311, 379
Hpy188III	TCNNGA	3 cut(s)	211, 578, 600
HpyAV	CCTTC	2 cut(s)	280, 619
HpyCH4III	ACNGT	1 cut(s)	723
HpyCH4IV	ACGT	2 cut(s)	122, 640
HpyCH4V	TGCA	9 cut(s)	12, 41, 259, 303, 414, 664, 757, 773, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 763
HpyF3I	CTNAG	2 cut(s)	169, 308
HpySE526I	ACGT	2 cut(s)	122, 640
Hsp92II	CATG	2 cut(s)	166, 496
Kzo9I	GATC	3 cut(s)	582, 596, 602
LmnI	GCTCC	3 cut(s)	190, 289, 786
LpnPI	CCDG	9 cut(s)	59, 86, 144, 252, 279, 536, 563, 743, 821
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	4 cut(s)	28, 246, 547, 782
MabI	ACCWGGT	1 cut(s)	265
MaeI	CTAG	3 cut(s)	675, 729, 835
MaeII	ACGT	2 cut(s)	122, 640
MaeIII	GTNAC	2 cut(s)	488, 618
MalI	GATC	3 cut(s)	584, 598, 604
MboI	GATC	3 cut(s)	582, 596, 602
MboII	GAAGA	2 cut(s)	661, 757
MhlI	GDGCHC	1 cut(s)	728
MluCI	AATT	6 cut(s)	233, 359, 372, 440, 614, 737
MnlI	CCTC	2 cut(s)	235, 338
Mph1103I	ATGCAT	1 cut(s)	775
MseI	TTAA	3 cut(s)	24, 657, 791
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	2 cut(s)	267, 551
MvaI	CCWGG	2 cut(s)	267, 551
MwoI	GCNNNNNNNGC	2 cut(s)	173, 763
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	3 cut(s)	582, 596, 602
NlaIII	CATG	2 cut(s)	166, 496
NmuCI	GTSAC	2 cut(s)	488, 618
NsiI	ATGCAT	1 cut(s)	775
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	11, 261
Psp1406I	AACGTT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	265, 549
PspGI	CCWGG	2 cut(s)	265, 549
PspPI	GGNCC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	24, 657, 791
SatI	GCNGC	2 cut(s)	10, 260
Sau3AI	GATC	3 cut(s)	582, 596, 602
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	267, 551
SduI	GDGCHC	1 cut(s)	728
SexAI	ACCWGGT	1 cut(s)	265
SfaNI	GCATC	4 cut(s)	28, 246, 547, 782
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	3 cut(s)	151, 329, 578
SmoI	CTYRAG	3 cut(s)	151, 329, 578
Sse9I	AATT	6 cut(s)	233, 359, 372, 440, 614, 737
SspMI	CTAG	3 cut(s)	675, 729, 835
StyD4I	CCNGG	2 cut(s)	265, 549
TaaI	ACNGT	1 cut(s)	723
TaiI	ACGT	2 cut(s)	125, 643
TasI	AATT	6 cut(s)	233, 359, 372, 440, 614, 737
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	24, 657, 791
Tru9I	TTAA	3 cut(s)	24, 657, 791
TscAI	CASTG	2 cut(s)	436, 728
TseFI	GTSAC	2 cut(s)	488, 618
TseI	GCWGC	2 cut(s)	9, 259
Tsp45I	GTSAC	2 cut(s)	488, 618
TspDTI	ATGAA	4 cut(s)	126, 433, 557, 750
TspRI	CASTG	2 cut(s)	436, 728
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	2 cut(s)	359, 440
XspI	CTAG	3 cut(s)	675, 729, 835
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.