Rw1G018220

beta-1,3-galactosyltransferase 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001006
Physical Location & Seq
Forward (+)
39999248 .. 39999610
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018220.1

Sequence Viewer

Length: 363 bp
ATGCAAGCTGAGTTTATCGGATGTTTTAAAGCTACTAAGCAAGCTGTGTGGTTGAGGAACTTTATAGGGCAGATGAGAGTGGTGGATTCTATTTCAAGGCCCTTGAAGATGTTTTGTGACAATGAAGCTGCTGTGTTCTTTTCAAAGAACAATAAAAGGACTTCTGCTTCAAGACTCATGGATGTTAAGTATTTGGTTGTGAGGGACAAGGTCAAAGACAAAGAAATCACCATTGAGTACATTTCTTCAAAGTCAAACACTGCTGATCCTCTTACCAAGGGTTTACCGGTGGAAGTATTTCAAAATCATGTTGCTAATATGGGAATACTTGAGTCTTTTGATGCAGTAGATCAGTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4094 Galactosyl_T

Protein Analysis

120

Amino Acids

13.64

Weight (kDa)

9.05

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 260
AfaI GTAC 1 cut(s) 239
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 6 cut(s) 96, 106, 144, 171, 249, 302
AluBI AGCT 4 cut(s) 8, 32, 44, 128
AluI AGCT 4 cut(s) 8, 32, 44, 128
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 128
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 220
BbvI GCAGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 99
BmsI GCATC 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 26, 187
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 100
BshTI ACCGGT 1 cut(s) 286
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 100
Bsp143I GATC 2 cut(s) 265, 349
BspANI GGCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 265, 349
BssT1I CCWWGG 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 6, 42
BstDEI CTNAG 2 cut(s) 9, 36
BstF5I GGATG 2 cut(s) 26, 187
BstKTI GATC 2 cut(s) 268, 352
BstMBI GATC 2 cut(s) 265, 349
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 26, 187
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 2 cut(s) 258, 359
Cac8I GCNNGC 2 cut(s) 6, 42
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 238
CspAI ACCGGT 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 2 cut(s) 178, 308
CviJI RGCY 5 cut(s) 8, 32, 44, 100, 128
CviKI_1 RGCY 5 cut(s) 8, 32, 44, 100, 128
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 9, 36
DpnI GATC 2 cut(s) 267, 351
DpnII GATC 2 cut(s) 265, 349
DraI TTTAAA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 181, 311
FaiI YATR 4 cut(s) 65, 179, 309, 320
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 177, 307
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 2 cut(s) 33, 194
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 287
Hin1II CATG 2 cut(s) 181, 311
HinfI GANTC 3 cut(s) 86, 174, 332
HpaII CCGG 1 cut(s) 287
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 4, 344, 357
HpyF3I CTNAG 2 cut(s) 9, 36
Hsp92II CATG 2 cut(s) 181, 311
Kzo9I GATC 2 cut(s) 265, 349
LpnPI CCDG 1 cut(s) 300
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 267, 351
MboI GATC 2 cut(s) 265, 349
MboII GAAGA 2 cut(s) 118, 237
MlyI GAGTC 2 cut(s) 168, 341
MnlI CCTC 3 cut(s) 48, 195, 279
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 27, 186
MspI CCGG 1 cut(s) 287
NdeII GATC 2 cut(s) 265, 349
NlaIII CATG 2 cut(s) 181, 311
NmuCI GTSAC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 86
PflFI GACNNNGTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 2 cut(s) 168, 340
PpsI GAGTC 2 cut(s) 168, 340
PspPI GGNCC 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 27, 186
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 265, 349
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 2 cut(s) 168, 341
SetI ASST 5 cut(s) 10, 34, 46, 130, 213
SfaNI GCATC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 276
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 27, 186
Tru9I TTAA 2 cut(s) 27, 186
TscAI CASTG 2 cut(s) 265, 359
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 2 cut(s) 265, 359
Tth111I GACNNNGTC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.