RchiOBHm_Chr6g0304531
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001006
Physical Location & Seq
Forward (+)
63779880 .. 63783937
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27363

Sequence Viewer

Length: 3141 bp
ATGAGGGTAGCTGTCAAGGCAGTTGGGACAGTGAAGCTAGAGTTTAGGCCTGGTGTTTTCTATTATTTAGAAGATGTTTATTATATTCCTTCGATGAGAAGGAATCTCATTTCAGTTAGTGTTTTGGTCAAGAAACAGTTCAGTTTTTTAGTAGATTTTTCTGGAATAAAAATTACCCTCGGATCTCAGTTTGTTGGACATGCTTCTTTCATTAATGATTATTGGGTGCTTCCTGCTTCATCTTCTATTGCATCTTCAGCTTCTAAACAAGTGCTTTTGCTTGAAAATGTGAATGGTGTGGTTGATGGTTGTATTGATTCTGCTATTGGTTCTAAAAGAAAGTTTTCAGAAAATTCTGCTTATTTGTGGCACAGACGGTTAGGCCATGTTTCTAAAGAGAGACTACTTCTTCTAGTTAAACAGGGAATTCTTCCTAAACTTGATTTCTCTGACTTGACTGATTGCATTGAGTGTGTTAAGGGCAAGTATGCCAAACAGAAAAAGAAAACAGCAACTAGAAGCACAAGTGTGTTGCAACTGGTTCACACAGACATTTGTGGACCTTTTGCGACTCAGACTTTATGTGGTAATAAATACTTTATCACATTCATAGATGACTACACAAGATTTTGCCATGTTTATCTCATCTCAGAAAAGGCACAAGCCTTAGAGAAATTTAAGATTTATAAAGCTGAAGTAGAGAAAGAGTTGAACACCGTCATTAAAACAGTCAGATCAGATAGAGGGGGTGAGTTCTATGGGAGGTACACTGAGCTTGGCCAGCACAAAGGGCCTTTTGCCTTGTTTCTGCAAGAACAAGGCATCCAGGCGCATTACACTACACCTGGAACTCCAGAGCAAAATGGGGTTGCAGAGAGGAGAAACAGGACTTTTATGAATATGGTGAGGTGCATGATGTGCACTTCAGGTCTTCCTGGGATGTTGTGGGGAGAGGCACTTAAAACAGCCAATTATTTGACCAACAGGACACCTAGCAAAGCAGTGAGCAAAACACCTTTTGAGCTTTGGAAAAACAGAAAACCTAGTGTGCTGCATACTCATGTTTGGGGTTGCAAGGCAGAAGCTAGACCTTATAATCCTCAAGAGTCTAAACTTGATTCCAAGACTGTTTCTGCATTTTTTATTGGCTATCCAGAGAATTCTAAAGGCTTTAAGTTTTATTGTCCTACACATACATCCAGAGTCATCGAAACCAATAAGGCAGTATTCATTGATGAGGTAAACTTTACAGATAAGTTTGAGGATTTTGAGTTTGATGAATTACCTGAGATTGAGTCAGATGTTGTAGATGCTCCTATTTCAGAACCAATAGTTGTTTTATCTGATTTTGGTACTCAACCTGCACCTGTAACTCAAAACCATGCTCAAACTGATGTTGTGGATGCACCATTAGTTCAAGAACCAGCAAATGCACAGCCACCACCACAACCTGTTCTTAGAAGATCACAAAGAGATAGAAGATCAGCCTTAGATGCTTTAGCTGCAGATTTTCAGATTTATTTACAAGAGGCAGATTTTGACATTGGTGAGATTAATGATCCCTTAACTTTCAAACAGGCCATTGAAAGTGAAAGATCTCACCAATGGGAGGAGGCAATGGTCTCTGAGCTAAAGTCTATGCATATTAACAAGGTGTGGACACTTGTTGAGCTGCCAGAAAATCACAAAGCTATAGGTTGTAAATGGGTATTTAAAACCAAAACCAAATCTGATGGGAGTATAGAGAGGTTTAAAGCCAGGCTAGTGGCTAAAGGCTTCACACAGCAAGAAGGCATTGACTTTAATGAAACATTTTCTCCTGTTTCAACAAAGGATGCTTTTAGAGTGGTCATGGCCTTAGTTGCTCATTATGACATGGAGCTGCACCAAATGGATGTCAAGACAGCTTTCTTGAATGGTGAGCTTGAGGAAGAGATTTACATGAAGCAACCTGAGGGCTTCATTGAACCTGGAACTGAAAAGTTAGTATGTAAGTTGAATAGATCCATCTATGGTTTGAAACAGGCTTCAAGACAGTGGTACTTGAAGTTTGATGCAGTGGTTAGTAATTTCGGCTTTAAAGAAAATCAGGTGGATGAATGTGTGTATATGAAGATAGAAGGGAAAAATTTTATTTTTCTAATATTGTACGTTGATGATATCCTGCTTGCTAGTACCAGCTTGAAGTTGTTGAAAGCTACTAAGGATTTCTTGTCAAAGAAATTTGACATGAAAGATTTAGGTGAGGCCAGCTATGTCTTGGGGATTGAGATCAAGAGGGATAGAACAAAGTGTTTGTTGGGGCTATCACAACAAGGTTATATTAATAAGGTTCTGAAGAGATTTGACATGCAGAGTTGTGCAAATGGAGAGGTTCCCATGTCAAAGGGTGACAAATTGACTAAGGAACAATGCCCTCAAAATGATATAGAAAGAGAGAATATGAAGACTAAGCCTTATGCACAGCTTGTAGGTAGTTTGATGTATGCGCAAGTGTGCACTAGACCTGACCTAGCCTATGCAGTAGGCATTTTGTCAAGATTTCAGTCCAATCCGGGTCCTGAGCATTGGATAGCAGGCAAGAAGATTTTGAGGTACCTTCAGAGAACCAAAGACCATCTGTTAGTTTATAGAAGAGTCAAGGAACTTGAGGTTGTAGGCTACTGTGATTCAGATTTTGCTAGTCACTTTCCTTCCTCCAAAAAGTCTACCTCAGGTTATGTTTTTACACTTGCAGGAGGAGCCATTGCTTGGAGAAGTGTCAAGCAAACCTTGATTGCCACTTCTACAATGCAGGCTGAGTTTATAGCTATTTATGAGGCTGTTTGTGAAGGACTTTGGTTGAAAAATTTTCTGGTTCAAACCAAGGCAGTTGACAGCATTGTTTCAAAACCTTTGAAATTTTACTGTGACAATTCAGCTGCAGTGTTCTTTACCAGGAACAATAAGAGGTCTACTAACTCCAAACACATAGACCTTAAATATTACAGTGTGAGAGAAAGAGTCAAGCATAGGGAAATTGAAGTTTTGAAGATTGGTACTGATTTTCAGTTGGCTGATCCCTTTACAAAGGCCATGACAGTAGCTGCTTTCAAGCAACACGCTACTGAAATTGGCATTTTGCCAAACTTGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 Retrotrans_gag zf-CCHC

Protein Analysis

1046

Amino Acids

118.68

Weight (kDa)

8.75

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 3 - 47 3.2e-08 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 116 - 162 2.7e-13 GAG-pre-integrase domain
rve PF00665 178 - 285 1.4e-09 Integrase core domain
SH3_retrovirus PF25597 360 - 418 2.9e-11 Retroviral polymerase SH3-like domain
RVT_2 PF07727 550 - 795 1.4e-77 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 687, 1095
Acc16I TGCGCA 1 cut(s) 2490
Acc36I ACCTGC 1 cut(s) 1369
Acc65I GGTACC 1 cut(s) 2595
AccB1I GGYRCC 1 cut(s) 2595
AccB7I CCANNNNNTGG 1 cut(s) 2751
AccI GTMKAC 2 cut(s) 2708, 2954
AclWI GGATC 4 cut(s) 190, 1553, 1998, 3053
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 8 cut(s) 352, 426, 674, 1159, 2128, 2222, 2848, 2900
AcuI CTGAAG 5 cut(s) 240, 714, 909, 2357, 2585
AfaI GTAC 7 cut(s) 767, 1354, 2042, 2150, 2176, 2597, 3040
AfiI CCNNNNNNNGG 2 cut(s) 1609, 2751
AjnI CCWGG 7 cut(s) 49, 825, 844, 934, 1757, 1969, 2936
AleI CACNNNNGTG 1 cut(s) 527
AloI GAACNNNNNNTCC 2 cut(s) 807, 839
Alw21I GWGCWC 2 cut(s) 923, 2501
Alw26I GTCTC 2 cut(s) 394, 1627
Alw44I GTGCAC 2 cut(s) 919, 2497
AlwI GGATC 4 cut(s) 190, 1553, 1998, 3053
AlwNI CAGNNNCTG 1 cut(s) 3086
AoxI GGCC 8 cut(s) 47, 382, 778, 791, 1578, 1854, 2247, 3072
ApaLI GTGCAC 2 cut(s) 919, 2497
ApeKI GCWGC 6 cut(s) 1051, 1502, 1672, 1882, 2921, 3086
ApoI RAATTY 8 cut(s) 352, 426, 674, 1159, 2128, 2222, 2848, 2900
AseI ATTAAT 3 cut(s) 213, 1554, 2325
Asp700I GAANNNNTTC 2 cut(s) 137, 343
Asp718I GGTACC 1 cut(s) 2595
AspLEI GCGC 2 cut(s) 832, 2491
AspS9I GGNCC 3 cut(s) 560, 791, 2558
AsuC2I CCSGG 1 cut(s) 2556
AsuHPI GGTGA 7 cut(s) 761, 916, 1559, 1592, 1931, 2255, 2402
AvaII GGWCC 2 cut(s) 560, 2558
AxyI CCTNAGG 2 cut(s) 1953, 2713
BaeGI GKGCMC 2 cut(s) 923, 2501
BalI TGGCCA 1 cut(s) 780
BanI GGYRCC 1 cut(s) 2595
BbsI GAAGAC 2 cut(s) 923, 2453
Bbv12I GWGCWC 2 cut(s) 923, 2501
BbvI GCAGC 6 cut(s) 1038, 1489, 1659, 1869, 2908, 3073
BccI CCATC 4 cut(s) 299, 1727, 2015, 2625
BciT130I CCWGG 7 cut(s) 51, 827, 846, 936, 1759, 1971, 2938
BcnI CCSGG 1 cut(s) 2556
BcoDI GTCTC 2 cut(s) 394, 1627
BfmI CTRYAG 3 cut(s) 1503, 1692, 2922
BfuAI ACCTGC 1 cut(s) 1369
BglII AGATCT 1 cut(s) 1595
BisI GCNGC 6 cut(s) 1052, 1503, 1673, 1883, 2922, 3087
BlsI GCNGC 6 cut(s) 1053, 1504, 1674, 1884, 2923, 3088
Bme1390I CCNGG 8 cut(s) 51, 827, 846, 936, 1759, 1971, 2556, 2938
Bme18I GGWCC 2 cut(s) 560, 2558
BmgT120I GGNCC 3 cut(s) 560, 791, 2558
BmiI GGNNCC 4 cut(s) 2376, 2559, 2597, 2743
BmrFI CCNGG 8 cut(s) 51, 827, 846, 936, 1759, 1971, 2556, 2938
BmsI GCATC 8 cut(s) 260, 831, 1300, 1393, 1483, 1825, 2044, 3124
BpiI GAAGAC 2 cut(s) 923, 2453
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 2562
BpuEI CTTGAG 3 cut(s) 1086, 1946, 2669
BpuMI CCSGG 1 cut(s) 2556
BsaBI GATNNNNATC 1 cut(s) 2270
BsaI GGTCTC 1 cut(s) 1627
BsaJI CCNNGG 3 cut(s) 178, 935, 2865
BsaXI ACNNNNNCTCC 2 cut(s) 1801, 1831
Bsc4I CCNNNNNNNGG 2 cut(s) 1609, 2751
Bse1I ACTGG 1 cut(s) 543
Bse21I CCTNAGG 2 cut(s) 1953, 2713
Bse3DI GCAATG 2 cut(s) 1623, 2745
Bse8I GATNNNNATC 1 cut(s) 2270
BseBI CCWGG 7 cut(s) 51, 827, 846, 936, 1759, 1971, 2938
BseDI CCNNGG 3 cut(s) 178, 935, 2865
BseGI GGATG 8 cut(s) 822, 945, 1196, 1408, 1840, 1900, 2101, 3139
BseJI GATNNNNATC 1 cut(s) 2270
BseLI CCNNNNNNNGG 2 cut(s) 1609, 2751
BseMI GCAATG 2 cut(s) 1623, 2745
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 3 cut(s) 892, 1625, 2754
BseSI GKGCMC 2 cut(s) 923, 2501
BseXI GCAGC 6 cut(s) 1038, 1489, 1659, 1869, 2908, 3073
BsgI GTGCAG 2 cut(s) 1347, 1868
BshFI GGCC 8 cut(s) 49, 384, 780, 793, 1580, 1856, 2249, 3074
BshNI GGYRCC 1 cut(s) 2595
BsiHKAI GWGCWC 2 cut(s) 923, 2501
BsiSI CCGG 1 cut(s) 2555
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 1609, 2751
BsmAI GTCTC 2 cut(s) 394, 1627
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 8 cut(s) 49, 384, 780, 793, 1580, 1856, 2249, 3074
Bso31I GGTCTC 1 cut(s) 1627
Bsp1286I GDGCHC 2 cut(s) 923, 2501
Bsp143I GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
BspANI GGCC 8 cut(s) 49, 384, 780, 793, 1580, 1856, 2249, 3074
BspLI GGNNCC 4 cut(s) 2376, 2559, 2597, 2743
BspMAI CTGCAG 2 cut(s) 1507, 2926
BspMI ACCTGC 1 cut(s) 1369
BspPI GGATC 4 cut(s) 190, 1553, 1998, 3053
BspT107I GGYRCC 1 cut(s) 2595
BspTNI GGTCTC 1 cut(s) 1627
BsrDI GCAATG 2 cut(s) 1623, 2745
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 3 cut(s) 178, 935, 2865
BssMI GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
BssT1I CCWWGG 1 cut(s) 2865
Bst2UI CCWGG 7 cut(s) 51, 827, 846, 936, 1759, 1971, 2938
Bst6I CTCTTC 3 cut(s) 1926, 2333, 2629
BstAPI GCANNNNNTGC 1 cut(s) 918
BstC8I GCNNGC 5 cut(s) 782, 2169, 2251, 2578, 2796
BstF5I GGATG 8 cut(s) 822, 945, 1196, 1408, 1840, 1900, 2101, 3139
BstHHI GCGC 2 cut(s) 832, 2491
BstKTI GATC 9 cut(s) 185, 737, 1466, 1484, 1561, 1598, 2006, 2274, 3061
BstMAI GTCTC 2 cut(s) 394, 1627
BstMBI GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
BstMWI GCNNNNNNNGC 9 cut(s) 17, 257, 781, 790, 918, 1493, 1502, 1862, 2741
BstNI CCWGG 7 cut(s) 51, 827, 846, 936, 1759, 1971, 2938
BstNSI RCATGY 2 cut(s) 203, 2353
BstSCI CCNGG 8 cut(s) 49, 825, 844, 934, 1757, 1969, 2554, 2936
BstSFI CTRYAG 3 cut(s) 1503, 1692, 2922
BstSLI GKGCMC 2 cut(s) 923, 2501
BstV1I GCAGC 6 cut(s) 1038, 1489, 1659, 1869, 2908, 3073
BstV2I GAAGAC 2 cut(s) 923, 2453
BstX2I RGATCY 3 cut(s) 182, 1595, 2003
BstXI CCANNNNNNTGG 1 cut(s) 1765
BstYI RGATCY 3 cut(s) 182, 1595, 2003
Bsu36I CCTNAGG 2 cut(s) 1953, 2713
BsuRI GGCC 8 cut(s) 49, 384, 780, 793, 1580, 1856, 2249, 3074
BtsCI GGATG 8 cut(s) 822, 945, 1196, 1408, 1840, 1900, 2101, 3139
BtsI GCAGTG 3 cut(s) 1008, 2064, 2931
BtsIMutI CAGTG 7 cut(s) 36, 768, 1008, 2042, 2064, 2931, 2995
BveI ACCTGC 1 cut(s) 1369
Cac8I GCNNGC 5 cut(s) 782, 2169, 2251, 2578, 2796
CaiI CAGNNNCTG 1 cut(s) 3086
CfoI GCGC 2 cut(s) 832, 2491
Cfr13I GGNCC 3 cut(s) 560, 791, 2558
Csp6I GTAC 7 cut(s) 766, 1353, 2041, 2149, 2175, 2596, 3039
CviQI GTAC 7 cut(s) 766, 1353, 2041, 2149, 2175, 2596, 3039
DpnI GATC 9 cut(s) 184, 736, 1465, 1483, 1560, 1597, 2005, 2273, 3060
DpnII GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
DraI TTTAAA 3 cut(s) 1714, 1753, 2080
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 3 cut(s) 1926, 2333, 2629
EarI CTCTTC 3 cut(s) 1926, 2333, 2629
Eco130I CCWWGG 1 cut(s) 2865
Eco147I AGGCCT 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 1627
Eco32I GATATC 1 cut(s) 2161
Eco47I GGWCC 2 cut(s) 560, 2558
Eco57I CTGAAG 5 cut(s) 240, 714, 909, 2357, 2585
Eco81I CCTNAGG 2 cut(s) 1953, 2713
EcoO109I RGGNCCY 2 cut(s) 791, 2558
EcoRI GAATTC 2 cut(s) 426, 1159
EcoRII CCWGG 7 cut(s) 49, 825, 844, 934, 1757, 1969, 2936
EcoRV GATATC 1 cut(s) 2161
EcoT14I CCWWGG 1 cut(s) 2865
EcoT22I ATGCAT 1 cut(s) 1644
ErhI CCWWGG 1 cut(s) 2865
FalI AAGNNNNNCTT 4 cut(s) 2195, 2227, 2756, 2788
FaqI GGGAC 1 cut(s) 40
FblI GTMKAC 2 cut(s) 2708, 2954
Fnu4HI GCNGC 6 cut(s) 1052, 1503, 1673, 1883, 2922, 3087
FokI GGATG 7 cut(s) 809, 952, 1183, 1415, 1847, 1907, 2108
Fsp4HI GCNGC 6 cut(s) 1052, 1503, 1673, 1883, 2922, 3087
FspI TGCGCA 1 cut(s) 2490
GlaI GCGC 2 cut(s) 831, 2490
GluI GCNGC 6 cut(s) 1052, 1503, 1673, 1883, 2922, 3087
GsuI CTGGAG 1 cut(s) 837
HaeIII GGCC 8 cut(s) 49, 384, 780, 793, 1580, 1856, 2249, 3074
HapII CCGG 1 cut(s) 2555
HhaI GCGC 2 cut(s) 832, 2491
Hin6I GCGC 2 cut(s) 830, 2489
HinP1I GCGC 2 cut(s) 830, 2489
HincII GTYRAC 1 cut(s) 2875
HindII GTYRAC 1 cut(s) 2875
HpaII CCGG 1 cut(s) 2555
HphI GGTGA 7 cut(s) 761, 916, 1559, 1592, 1931, 2255, 2402
HpyAV CCTTC 7 cut(s) 93, 99, 1784, 2114, 2609, 2703, 2825
HpyCH4IV ACGT 1 cut(s) 2151
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 257, 781, 790, 918, 1493, 1502, 1862, 2741
HpySE526I ACGT 1 cut(s) 2151
HspAI GCGC 2 cut(s) 830, 2489
KpnI GGTACC 1 cut(s) 2599
Kzo9I GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
LmnI GCTCC 3 cut(s) 1318, 1879, 2741
Lsp1109I GCAGC 6 cut(s) 1038, 1489, 1659, 1869, 2908, 3073
LweI GCATC 8 cut(s) 260, 831, 1300, 1393, 1483, 1825, 2044, 3124
MaeII ACGT 1 cut(s) 2151
MaeIII GTNAC 4 cut(s) 1369, 2390, 2684, 2909
MalI GATC 9 cut(s) 184, 736, 1465, 1483, 1560, 1597, 2005, 2273, 3060
MboI GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
MflI RGATCY 3 cut(s) 182, 1595, 2003
MhlI GDGCHC 2 cut(s) 923, 2501
MlsI TGGCCA 1 cut(s) 780
MluNI TGGCCA 1 cut(s) 780
MlyI GAGTC 6 cut(s) 565, 1115, 1212, 1304, 2646, 3012
MmeI TCCRAC 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 780
Mph1103I ATGCAT 1 cut(s) 1644
MroXI GAANNNNTTC 2 cut(s) 137, 343
MscI TGGCCA 1 cut(s) 780
MslI CAYNNNNRTG 2 cut(s) 527, 1059
Msp20I TGGCCA 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 2921
MspI CCGG 1 cut(s) 2555
MspR9I CCNGG 8 cut(s) 51, 827, 846, 936, 1759, 1971, 2556, 2938
MvaI CCWGG 7 cut(s) 51, 827, 846, 936, 1759, 1971, 2938
MwoI GCNNNNNNNGC 9 cut(s) 17, 257, 781, 790, 918, 1493, 1502, 1862, 2741
NciI CCSGG 1 cut(s) 2556
NdeII GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
NlaIV GGNNCC 4 cut(s) 2376, 2559, 2597, 2743
NmuCI GTSAC 3 cut(s) 2390, 2684, 2909
NsbI TGCGCA 1 cut(s) 2490
NsiI ATGCAT 1 cut(s) 1644
NspI RCATGY 2 cut(s) 203, 2353
OliI CACNNNNGTG 1 cut(s) 527
PceI AGGCCT 1 cut(s) 49
PdmI GAANNNNTTC 2 cut(s) 137, 343
PfeI GAWTC 4 cut(s) 103, 317, 1118, 2669
PflMI CCANNNNNTGG 1 cut(s) 2751
PkrI GCNGC 6 cut(s) 1053, 1504, 1674, 1884, 2923, 3088
PleI GAGTC 6 cut(s) 565, 1114, 1211, 1303, 2645, 3011
PpsI GAGTC 6 cut(s) 565, 1114, 1211, 1303, 2645, 3011
PpuMI RGGWCCY 1 cut(s) 2558
PshBI ATTAAT 3 cut(s) 213, 1554, 2325
PsiI TTATAA 2 cut(s) 687, 1095
Psp5II RGGWCCY 1 cut(s) 2558
Psp6I CCWGG 7 cut(s) 49, 825, 844, 934, 1757, 1969, 2936
PspGI CCWGG 7 cut(s) 49, 825, 844, 934, 1757, 1969, 2936
PspN4I GGNNCC 4 cut(s) 2376, 2559, 2597, 2743
PspPI GGNCC 3 cut(s) 560, 791, 2558
PspPPI RGGWCCY 1 cut(s) 2558
PstI CTGCAG 2 cut(s) 1507, 2926
PstNI CAGNNNCTG 1 cut(s) 3086
PsuI RGATCY 3 cut(s) 182, 1595, 2003
PvuII CAGCTG 1 cut(s) 2921
RsaI GTAC 7 cut(s) 767, 1354, 2042, 2150, 2176, 2597, 3040
RsaNI GTAC 7 cut(s) 766, 1353, 2041, 2149, 2175, 2596, 3039
RseI CAYNNNNRTG 2 cut(s) 527, 1059
SatI GCNGC 6 cut(s) 1052, 1503, 1673, 1883, 2922, 3087
Sau3AI GATC 9 cut(s) 182, 734, 1463, 1481, 1558, 1595, 2003, 2271, 3058
Sau96I GGNCC 3 cut(s) 560, 791, 2558
SchI GAGTC 6 cut(s) 565, 1115, 1212, 1304, 2646, 3012
ScrFI CCNGG 8 cut(s) 51, 827, 846, 936, 1759, 1971, 2556, 2938
SduI GDGCHC 2 cut(s) 923, 2501
SfaNI GCATC 8 cut(s) 260, 831, 1300, 1393, 1483, 1825, 2044, 3124
SfcI CTRYAG 3 cut(s) 1503, 1692, 2922
SinI GGWCC 2 cut(s) 560, 2558
SmiMI CAYNNNNRTG 2 cut(s) 527, 1059
SmlI CTYRAG 3 cut(s) 1101, 1925, 2648
SmoI CTYRAG 3 cut(s) 1101, 1925, 2648
SseBI AGGCCT 1 cut(s) 49
SspI AATATT 2 cut(s) 2145, 2984
StuI AGGCCT 1 cut(s) 49
StyD4I CCNGG 8 cut(s) 49, 825, 844, 934, 1757, 1969, 2554, 2936
StyI CCWWGG 1 cut(s) 2865
TaiI ACGT 1 cut(s) 2154
TaqI TCGA 2 cut(s) 92, 1209
TfiI GAWTC 4 cut(s) 103, 317, 1118, 2669
TscAI CASTG 7 cut(s) 36, 775, 1008, 2042, 2064, 2931, 2995
TseFI GTSAC 3 cut(s) 2390, 2684, 2909
TseI GCWGC 6 cut(s) 1051, 1502, 1672, 1882, 2921, 3086
Tsp45I GTSAC 3 cut(s) 2390, 2684, 2909
TspRI CASTG 7 cut(s) 36, 775, 1008, 2042, 2064, 2931, 2995
Van91I CCANNNNNTGG 1 cut(s) 2751
VneI GTGCAC 2 cut(s) 919, 2497
VpaK11BI GGWCC 2 cut(s) 560, 2558
VspI ATTAAT 3 cut(s) 213, 1554, 2325
XapI RAATTY 8 cut(s) 352, 426, 674, 1159, 2128, 2222, 2848, 2900
XceI RCATGY 2 cut(s) 203, 2353
XcmI CCANNNNNNNNNTGG 1 cut(s) 2257
XmiI GTMKAC 2 cut(s) 2708, 2954
XmnI GAANNNNTTC 2 cut(s) 137, 343
Zsp2I ATGCAT 1 cut(s) 1644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.