Rroxscaffold_3G00227430

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001006
Physical Location & Seq
Reverse (-)
11546923 .. 11547714
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227430.1

Sequence Viewer

Length: 792 bp
ATGGAGAAGTGTGCAGTTGGAGAAGTTCCCATGTCCAAAGGAGATAAGTTAACCAAGAAGCAAAGTCCCAATAGTGATGTTGAAAAGGAAAATATGGAGTCAAAGCCTTATGCCAGACTTGTAGGAAGTCTCATGTATGCACAAGTACGCACTAGGCCGGACTTGTCTTTTGCGGTAGGAATTTTGTCAAGATTCCAATCTAATCCGAGCCATGAACATTGGGTAGCTGGGAAGAAAGTGTTGAGATACCTGCAGAGAACTAAAAGTCACATGCTAGTTTATAGGCAAGTGGAGGATCTGAAACTCATTGGATTCTCGGACTCGGATTTTGCGGGGAATTATCCGGACTCCAAGAAATCGACTTGTGGATATGTGTTCATGCTTGCGGGAGGTGCTATTGCTTGGAAAACCATGAAACAAACACTTGTTTCAACTTCTACTATGCAAGCTGAATTTATTGCAGTATATGAAACTGTGTGTGAAGGACTTTGGATTAGGAATTTTCTCATGCGGACCAAAGTATTGAGTCACATTGTGGCTGGAACACTTGTGATTTATTGTGACAATGAGGCTGCAGTTTTCTTTAGCAAAAACAGTAAAAGATCAAATAATTCTAAACACATTGATCTAAAGTATTACAGTGTTAGAGAAAGAGTAAAGCATGGTGAAATAGCTGTTTTGAGTATTGACACAAATTCACGGCTAGCAGATCCTTTCACCAAGGCCTTGTCGGTAGCAACATTCCAAAAGCATACAACAAGCATTGGAGTTTTGGCTAGTCTAGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

263

Amino Acids

29.5

Weight (kDa)

9.43

Isoelectric Point (pI)

28.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 4 cut(s) 173, 332, 386, 511
AclWI GGATC 2 cut(s) 303, 704
AcsI RAATTY 4 cut(s) 180, 452, 499, 694
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 1 cut(s) 147
AgsI TTSAA 2 cut(s) 83, 432
AluBI AGCT 3 cut(s) 227, 449, 674
AluI AGCT 3 cut(s) 227, 449, 674
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 303, 704
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 2 cut(s) 155, 723
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 4 cut(s) 180, 452, 499, 694
ArsI GACNNNNNNTTYG 4 cut(s) 152, 184, 311, 343
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 2 cut(s) 677, 709
AsuNHI GCTAGC 1 cut(s) 703
AvaII GGWCC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 716
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 5 cut(s) 153, 275, 704, 777, 782
BfmI CTRYAG 2 cut(s) 251, 573
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 513
BmtI GCTAGC 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 720
BsaWI WCCGGW 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 720
BseJI GATNNNNATC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 559
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 2 cut(s) 157, 725
BsiSI CCGG 2 cut(s) 158, 344
BslFI GGGAC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 2 cut(s) 157, 725
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 4 cut(s) 295, 602, 625, 709
BspACI CCGC 4 cut(s) 173, 332, 386, 511
BspANI GGCC 2 cut(s) 157, 725
BspEI TCCGGA 1 cut(s) 343
BspMAI CTGCAG 2 cut(s) 255, 577
BspMI ACCTGC 1 cut(s) 258
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 2 cut(s) 303, 704
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 4 cut(s) 295, 602, 625, 709
BssT1I CCWWGG 1 cut(s) 720
Bst4CI ACNGT 3 cut(s) 475, 596, 641
BstC8I GCNNGC 3 cut(s) 384, 447, 705
BstKTI GATC 4 cut(s) 298, 605, 628, 712
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 4 cut(s) 295, 602, 625, 709
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 274
BstSFI CTRYAG 2 cut(s) 251, 573
BstV1I GCAGC 1 cut(s) 559
BstX2I RGATCY 2 cut(s) 295, 709
BstYI RGATCY 2 cut(s) 295, 709
BsuRI GGCC 2 cut(s) 157, 725
BtsIMutI CAGTG 1 cut(s) 646
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 3 cut(s) 384, 447, 705
Cfr13I GGNCC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 146
CviAII CATG 8 cut(s) 31, 133, 212, 271, 379, 412, 508, 662
CviQI GTAC 1 cut(s) 146
DpnI GATC 4 cut(s) 297, 604, 627, 711
DpnII GATC 4 cut(s) 295, 602, 625, 709
DraIII CACNNNGTG 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 725
Eco47I GGWCC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 8 cut(s) 34, 136, 215, 274, 382, 415, 511, 665
FaqI GGGAC 1 cut(s) 51
FatI CATG 8 cut(s) 30, 132, 211, 270, 378, 411, 507, 661
FauI CCCGC 2 cut(s) 325, 379
Fnu4HI GCNGC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 5 cut(s) 153, 275, 704, 777, 782
GluI GCNGC 1 cut(s) 573
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 157, 725
HapII CCGG 2 cut(s) 158, 344
Hin1II CATG 8 cut(s) 34, 136, 215, 274, 382, 415, 511, 665
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 6 cut(s) 98, 192, 312, 320, 347, 526
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 2 cut(s) 158, 344
HphI GGTGA 2 cut(s) 677, 709
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 207, 300, 319, 325
Hpy188III TCNNGA 3 cut(s) 189, 344, 782
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 3 cut(s) 475, 596, 641
HpyCH4V TGCA 6 cut(s) 14, 140, 253, 445, 461, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
Hsp92II CATG 8 cut(s) 34, 136, 215, 274, 382, 415, 511, 665
Kpn2I TCCGGA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 4 cut(s) 295, 602, 625, 709
LpnPI CCDG 6 cut(s) 127, 171, 213, 263, 357, 525
Lsp1109I GCAGC 1 cut(s) 559
MaeI CTAG 5 cut(s) 153, 275, 704, 777, 782
MaeIII GTNAC 3 cut(s) 266, 527, 560
MalI GATC 4 cut(s) 297, 604, 627, 711
MboI GATC 4 cut(s) 295, 602, 625, 709
MboII GAAGA 1 cut(s) 244
MflI RGATCY 2 cut(s) 295, 709
MluCI AATT 6 cut(s) 180, 337, 452, 499, 610, 694
MlyI GAGTC 4 cut(s) 107, 314, 341, 535
MnlI CCTC 3 cut(s) 286, 383, 562
MroI TCCGGA 1 cut(s) 343
MseI TTAA 1 cut(s) 50
MspI CCGG 2 cut(s) 158, 344
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 4 cut(s) 295, 602, 625, 709
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 8 cut(s) 34, 136, 215, 274, 382, 415, 511, 665
NmuCI GTSAC 3 cut(s) 266, 527, 560
NspI RCATGY 1 cut(s) 274
PceI AGGCCT 1 cut(s) 725
PfeI GAWTC 2 cut(s) 192, 312
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 4 cut(s) 106, 314, 341, 534
PpsI GAGTC 4 cut(s) 106, 314, 341, 534
PspFI CCCAGC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 513
PstI CTGCAG 2 cut(s) 255, 577
PsuI RGATCY 2 cut(s) 295, 709
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 4 cut(s) 295, 602, 625, 709
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 4 cut(s) 107, 314, 341, 535
SetI ASST 5 cut(s) 229, 252, 394, 451, 676
SfcI CTRYAG 2 cut(s) 251, 573
SinI GGWCC 1 cut(s) 513
Sse9I AATT 6 cut(s) 180, 337, 452, 499, 610, 694
SseBI AGGCCT 1 cut(s) 725
SsiI CCGC 4 cut(s) 173, 332, 386, 511
SspMI CTAG 5 cut(s) 153, 275, 704, 777, 782
StuI AGGCCT 1 cut(s) 725
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 3 cut(s) 475, 596, 641
TaqI TCGA 1 cut(s) 359
TasI AATT 6 cut(s) 180, 337, 452, 499, 610, 694
TfiI GAWTC 2 cut(s) 192, 312
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 3 cut(s) 266, 527, 560
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 3 cut(s) 266, 527, 560
TspDTI ATGAA 4 cut(s) 228, 367, 428, 483
TspRI CASTG 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 513
XapI RAATTY 4 cut(s) 180, 452, 499, 694
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 1 cut(s) 274
XspI CTAG 5 cut(s) 153, 275, 704, 777, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.