Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Forward (+)

4175285 .. 4176196

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04791.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAAGATTTAGGTGAAGCTAGGTATGTGCTTGGTATTGAGATTAAGAGAAATAGAGCCAACAGAGTTTTGGCATTGTCACAGGAGGGATATGTCAGGAAGATTCTGAAAAGATTTGATATGGAGACTTGTTCAGCTAATGATGTTCCAATGACAAAAGGTGATAAGCTAAACAAGGATCAGTGTCCCAAGACTGATTTAGAAAAGAAGAACATGGAGGGTAAGCCTTATGCACAGCTGATTGGGAGTTTAATGTATGCACAGACATGCACAAGGCCTGACTTGGCTTATGCAGTCGGAGTTTTAGCACGATTTCAATCCAATCCTAGGCCTGAGCATTGGATTGGGGGGAAGAAGGTGCTAAGATATTTGCAGAAGACTAAGGCACATATGTTAGTCTACAGACAAGTGAAAAACTTAGAAATTACTGCATATTGTGACTCATATTTTACATCCAAGTTTCCATCATCCAATAAGTCCACCACTGGCTATGTTTTTATTTTAGCAGGAGGAGCAGTAGCTTGGAGAAGTGTAAAACAAGAATTGATTTCCACTTCTACTATGCAGGTTGAATTCATCGCAATTTATGATTCGGTGTGTGAAGGTGTTTGGCTGAAAAATTTCCTGATTCAGACAAGACTTGTTGATAGCATTTTGTCTAGGCCAATGAAATATTTAAGTGATAATTCTGCTGCTGTGTACTTCACTAAAAATAATAAGAGGTCCAATAATTCTAAGCATTTGGGACTTAAGCATTACAGTGTGAGGGAAAAGGTGAAACATGGTGAGATTGAAGTTTTGCAAATTGACACTTTATCTCAACTTGCAGACCCTTTTACCAAAGCCTTGACAGCAGTGAGTTTTGAAGAACATGCAAGGAGCATTGGTATTTTACCTGATTTAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

304

Amino Acids

34.35

Weight (kDa)

9.45

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	572, 619
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	4 cut(s)	317, 572, 794, 866
AluBI	AGCT	5 cut(s)	20, 137, 169, 238, 521
AluI	AGCT	5 cut(s)	20, 137, 169, 238, 521
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	3 cut(s)	275, 329, 662
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	2 cut(s)	572, 619
Asp700I	GAANNNNTTC	1 cut(s)	620
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	4 cut(s)	26, 173, 787, 797
AvaII	GGWCC	1 cut(s)	723
AvrII	CCTAGG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	3 cut(s)	21, 327, 660
BfmI	CTRYAG	1 cut(s)	400
BfrI	CTTAAG	1 cut(s)	749
BfuAI	ACCTGC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	693
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	723
BmsI	GCATC	1 cut(s)	895
BpiI	GAAGAC	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 871, 901
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	452, 467
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	679
BshFI	GGCC	3 cut(s)	277, 331, 664
BslFI	GGGAC	2 cut(s)	171, 759
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	171, 759
BsnI	GGCC	3 cut(s)	277, 331, 664
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	3 cut(s)	277, 331, 664
BspCNI	CTCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	761
BstAFI	CTTAAG	1 cut(s)	749
BstDEI	CTNAG	5 cut(s)	333, 362, 381, 418, 735
BstF5I	GGATG	2 cut(s)	452, 467
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 851
BstNSI	RCATGY	2 cut(s)	270, 875
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	277, 331, 664
BtgZI	GCGATG	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	452, 467
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	188, 483, 766, 861
BveI	ACCTGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	700
CviAII	CATG	4 cut(s)	214, 267, 782, 872
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	5 cut(s)	333, 362, 381, 418, 735
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	326
Eco147I	AGGCCT	2 cut(s)	277, 331
Eco47I	GGWCC	1 cut(s)	723
EcoRI	GAATTC	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	4 cut(s)	217, 270, 785, 875
FaqI	GGGAC	2 cut(s)	171, 759
FatI	CATG	4 cut(s)	213, 266, 781, 871
FauNDI	CATATG	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	2 cut(s)	439, 454
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	3 cut(s)	21, 327, 660
GluI	GCNGC	1 cut(s)	693
HaeIII	GGCC	3 cut(s)	277, 331, 664
Hin1II	CATG	4 cut(s)	217, 270, 785, 875
HinfI	GANTC	4 cut(s)	103, 440, 590, 628
HphI	GGTGA	4 cut(s)	26, 173, 787, 797
Hpy166II	GTNNAC	3 cut(s)	400, 480, 700
Hpy188I	TCNGA	3 cut(s)	108, 299, 633
Hpy188III	TCNNGA	2 cut(s)	97, 625
Hpy8I	GTNNAC	3 cut(s)	400, 480, 700
HpyAV	CCTTC	2 cut(s)	349, 596
HpyCH4III	ACNGT	1 cut(s)	761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 851
HpyF3I	CTNAG	5 cut(s)	333, 362, 381, 418, 735
Hsp92II	CATG	4 cut(s)	217, 270, 785, 875
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	512, 879
LpnPI	CCDG	8 cut(s)	68, 82, 291, 345, 471, 492, 551, 638
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	3 cut(s)	21, 327, 660
MaeIII	GTNAC	2 cut(s)	78, 437
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	5 cut(s)	112, 220, 364, 388, 878
MluCI	AATT	8 cut(s)	423, 542, 572, 582, 619, 685, 730, 804
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	5 cut(s)	79, 211, 503, 714, 759
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	4 cut(s)	45, 251, 677, 750
MslI	CAYNNNNRTG	2 cut(s)	265, 759
MspA1I	CMGCKG	1 cut(s)	238
MspCI	CTTAAG	1 cut(s)	749
MwoI	GCNNNNNNNGC	2 cut(s)	512, 851
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	217, 270, 785, 875
NmuCI	GTSAC	2 cut(s)	78, 437
NspI	RCATGY	2 cut(s)	270, 875
PceI	AGGCCT	2 cut(s)	277, 331
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	103, 590, 628
PkrI	GCNGC	1 cut(s)	694
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	723
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
RseI	CAYNNNNRTG	2 cut(s)	265, 759
SaqAI	TTAA	4 cut(s)	45, 251, 677, 750
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	1 cut(s)	434
SfaNI	GCATC	1 cut(s)	895
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	723
SmiMI	CAYNNNNRTG	2 cut(s)	265, 759
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	8 cut(s)	423, 542, 572, 582, 619, 685, 730, 804
SseBI	AGGCCT	2 cut(s)	277, 331
SspI	AATATT	1 cut(s)	674
SspMI	CTAG	3 cut(s)	21, 327, 660
StuI	AGGCCT	2 cut(s)	277, 331
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	761
TasI	AATT	8 cut(s)	423, 542, 572, 582, 619, 685, 730, 804
TatI	WGTACW	1 cut(s)	699
TfiI	GAWTC	3 cut(s)	103, 590, 628
Tru1I	TTAA	4 cut(s)	45, 251, 677, 750
Tru9I	TTAA	4 cut(s)	45, 251, 677, 750
TscAI	CASTG	4 cut(s)	188, 490, 766, 861
TseFI	GTSAC	2 cut(s)	78, 437
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	2 cut(s)	78, 437
TspDTI	ATGAA	3 cut(s)	17, 565, 683
TspRI	CASTG	4 cut(s)	188, 490, 766, 861
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	723
XapI	RAATTY	2 cut(s)	572, 619
XceI	RCATGY	2 cut(s)	270, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmaJI	CCTAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	3 cut(s)	21, 327, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.