Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

9370241 .. 9375060

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGGATTTAGGTGAAGCCTCCTGTGTACTTGGTATCAAAATCTGCAGAGATAGAAAGAATAGTCTTTTAGGTTTGTCTCAGAAAAATTACATAGACAAAGTTCTTAAAAGATTTAAAATGGATAAGTGTGCTCCGGGGGATGCTCTTATGACTAAGGGTGATTTGCTGCATAAAGATCAGTGTCCCAGGAATAATTTAGAACAAGAATCCATGAAAGATAAACCCTATGCCTCACTTATTGGGAGCCTGATGTATGCTCAGGTCTGTACTAGGCCTGATATTGCTTATTTTGTTGGAATGTTGGGTAGATTTCAAACAAACCCAGGTCATGCACATTGGGCTGGAAAGAAAGTCTTAAGATACCTGCAGGGCACTAGAGACCATCTTTTAGTGTATAAAAGAATTGAAAATCAAGAACAGGAAGTGATAGGATATTCAGATGCTAACTATATAGGGAAAAATAAGTCCAAAACTCAGAAAAAGTCCACATCTGGTTTTGTGTTTATGCTTGTAGGTGGCGCAATTTCTTGGAAATCTGTAAAACAGACTTGTGTGACTACATCTACGATGCATGCTGAGTTCATTTCATTATATGAAGCCACTATACATGTTGTGTGGCTTAGAAACTTTATCAAAGCCATTAGAGTAGTGGATTCCATTCACAGACCCTTGCAGATTTGCTGTGATAATAGTGCAACAGTGTTCTTTTCAAAGAACAATAAGAGATCCTCAAAAACTAAGTTTGTAGATCCTAAGCATCTTTTGGTTCTAGAGAAAGTGAAGCATCATGAAATTATAGTTGATCATATTAGTGGAGATAACATGTTAGCAGACCCTTTTACAAAACCATTAGCAATTGGGGTTTTTAAGGAACATGTTATGAATATGGGATTGATTCAGTCATTTGACATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2

Protein Analysis

306

Amino Acids

34.67

Weight (kDa)

9.45

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	375
AclWI	GGATC	2 cut(s)	723, 746
AfaI	GTAC	2 cut(s)	30, 271
AflII	CTTAAG	1 cut(s)	358
AflIII	ACRYGT	3 cut(s)	610, 825, 877
AgsI	TTSAA	3 cut(s)	317, 410, 714
AjnI	CCWGG	2 cut(s)	188, 325
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	84, 375
AlwI	GGATC	2 cut(s)	723, 746
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	524
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	26, 173
BaeGI	GKGCMC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	1 cut(s)	393
BciT130I	CCWGG	2 cut(s)	190, 327
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	84, 375
BfaI	CTAG	3 cut(s)	273, 378, 773
BfmI	CTRYAG	2 cut(s)	46, 368
BfrI	CTTAAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	3 cut(s)	138, 190, 327
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	3 cut(s)	138, 190, 327
BmsI	GCATC	5 cut(s)	133, 433, 561, 769, 796
Bpu10I	CCTNAGC	2 cut(s)	261, 756
BpuMI	CCSGG	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	137, 188, 325
BseBI	CCWGG	2 cut(s)	190, 327
BseDI	CCNNGG	3 cut(s)	137, 188, 325
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	4 cut(s)	95, 275, 491, 570
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	84, 375
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	136, 377
Bsp143I	GATC	4 cut(s)	178, 728, 751, 805
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	4 cut(s)	94, 274, 490, 571
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	1 cut(s)	248
BspMAI	CTGCAG	2 cut(s)	50, 372
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	723, 746
BspTI	CTTAAG	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	137, 188, 325
BssMI	GATC	4 cut(s)	178, 728, 751, 805
Bst2UI	CCWGG	2 cut(s)	190, 327
Bst4CI	ACNGT	1 cut(s)	703
BstAFI	CTTAAG	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	8 cut(s)	81, 156, 261, 477, 579, 623, 741, 756
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	4 cut(s)	181, 731, 754, 808
BstMAI	GTCTC	2 cut(s)	84, 375
BstMBI	GATC	4 cut(s)	178, 728, 751, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	2 cut(s)	190, 327
BstNSI	RCATGY	4 cut(s)	578, 614, 829, 881
BstSCI	CCNGG	3 cut(s)	136, 188, 325
BstSFI	CTRYAG	2 cut(s)	46, 368
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	728, 751
BstYI	RGATCY	2 cut(s)	728, 751
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	188, 708
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	576
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	29, 270
CviAII	CATG	9 cut(s)	214, 332, 575, 611, 791, 826, 878, 913, 918
CviJI	RGCY	7 cut(s)	20, 249, 277, 344, 602, 622, 641
CviKI_1	RGCY	7 cut(s)	20, 249, 277, 344, 602, 622, 641
CviQI	GTAC	2 cut(s)	29, 270
DdeI	CTNAG	8 cut(s)	81, 156, 261, 477, 579, 623, 741, 756
DpnI	GATC	4 cut(s)	180, 730, 753, 807
DpnII	GATC	4 cut(s)	178, 728, 751, 805
DraI	TTTAAA	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	188, 325
EcoT22I	ATGCAT	1 cut(s)	576
FaeI	CATG	9 cut(s)	217, 335, 578, 614, 794, 829, 881, 916, 921
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	9 cut(s)	213, 331, 574, 610, 790, 825, 877, 912, 917
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	3 cut(s)	273, 378, 773
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	9 cut(s)	217, 335, 578, 614, 794, 829, 881, 916, 921
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HinfI	GANTC	3 cut(s)	209, 656, 898
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	26, 173
Hpy166II	GTNNAC	2 cut(s)	29, 489
Hpy188I	TCNGA	3 cut(s)	84, 442, 480
Hpy188III	TCNNGA	3 cut(s)	416, 773, 791
Hpy8I	GTNNAC	2 cut(s)	29, 489
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	7 cut(s)	48, 172, 335, 370, 574, 676, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	8 cut(s)	81, 156, 261, 477, 579, 623, 741, 756
Hsp92II	CATG	9 cut(s)	217, 335, 578, 614, 794, 829, 881, 916, 921
HspAI	GCGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	4 cut(s)	178, 728, 751, 805
LmnI	GCTCC	2 cut(s)	139, 246
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	5 cut(s)	133, 433, 561, 769, 796
MaeI	CTAG	3 cut(s)	273, 378, 773
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	4 cut(s)	180, 730, 753, 807
MboI	GATC	4 cut(s)	178, 728, 751, 805
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	2 cut(s)	728, 751
MhlI	GDGCHC	2 cut(s)	136, 377
MluCI	AATT	6 cut(s)	88, 196, 405, 525, 795, 858
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	31, 244, 742
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	4 cut(s)	108, 117, 359, 870
MslI	CAYNNNNRTG	1 cut(s)	813
MspCI	CTTAAG	1 cut(s)	358
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	138, 190, 327
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	2 cut(s)	190, 327
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	178, 728, 751, 805
NlaIII	CATG	9 cut(s)	217, 335, 578, 614, 794, 829, 881, 916, 921
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	4 cut(s)	578, 614, 829, 881
PaeI	GCATGC	1 cut(s)	578
PagI	TCATGA	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	277
PciI	ACATGT	3 cut(s)	610, 825, 877
PfeI	GAWTC	3 cut(s)	209, 656, 898
PkrI	GCNGC	1 cut(s)	171
PscI	ACATGT	3 cut(s)	610, 825, 877
Psp6I	CCWGG	2 cut(s)	188, 325
PspGI	CCWGG	2 cut(s)	188, 325
PspN4I	GGNNCC	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	50, 372
PsuI	RGATCY	2 cut(s)	728, 751
RsaI	GTAC	2 cut(s)	30, 271
RsaNI	GTAC	2 cut(s)	29, 270
RseI	CAYNNNNRTG	1 cut(s)	813
SaqAI	TTAA	4 cut(s)	108, 117, 359, 870
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	178, 728, 751, 805
SbfI	CCTGCAGG	1 cut(s)	372
ScrFI	CCNGG	3 cut(s)	138, 190, 327
SdaI	CCTGCAGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	136, 377
SetI	ASST	6 cut(s)	16, 76, 267, 331, 369, 520
SfaNI	GCATC	5 cut(s)	133, 433, 561, 769, 796
SfcI	CTRYAG	2 cut(s)	46, 368
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
SphI	GCATGC	1 cut(s)	578
Sse8387I	CCTGCAGG	1 cut(s)	372
Sse9I	AATT	6 cut(s)	88, 196, 405, 525, 795, 858
SseBI	AGGCCT	1 cut(s)	277
SspMI	CTAG	3 cut(s)	273, 378, 773
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	136, 188, 325
TaaI	ACNGT	1 cut(s)	703
TasI	AATT	6 cut(s)	88, 196, 405, 525, 795, 858
TatI	WGTACW	2 cut(s)	28, 269
TfiI	GAWTC	3 cut(s)	209, 656, 898
Tru1I	TTAA	4 cut(s)	108, 117, 359, 870
Tru9I	TTAA	4 cut(s)	108, 117, 359, 870
TscAI	CASTG	2 cut(s)	188, 708
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	7 cut(s)	17, 230, 574, 579, 612, 807, 899
TspRI	CASTG	2 cut(s)	188, 708
Vha464I	CTTAAG	1 cut(s)	358
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	4 cut(s)	578, 614, 829, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XspI	CTAG	3 cut(s)	273, 378, 773
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.