Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

43789709 .. 43791016

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGTTAGTAGCTCACTACAACTTGGAACTGCATCAAATGGATGTCAAGACAACATTTTTGAATGAAGAATTAGTGGAGGACATTTACATGATGCAGCCACCAGGTTTTGTTGAAAGGGGGAAGGAGCATATGCCTTATGCATCTTTAGTTGGCAGCTTAATGTATGCACAAGTATGCACAAGACCGGACTTTGCTTTTGCTATGGGAGTTCTAGGAAGGTTTCAATCAAATCCTGGTTTGCATCATTGGACTGCAGCTAAAAAGGTTCTGCCTGCTGTGTTCCTTTCAAAGAACAATAAGAGGACTTCTACTTCAAGACTCATGGATGTTAAGTATCTGGTTGTGAGGGACAAGGTAAAAGACAAAGAAATCACCATTGAGTACATTTCTTCGAAGTCAAACATTGATGATCCTCTTACCAAGGGTTTACCAGTGGGAGTATTCCAAAATCATGTTGCTAATATGGGATTACACAAGTCTTTTGATGCAGCAGATCAGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

169

Amino Acids

19.17

Weight (kDa)

7.06

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 43	5.7e-09	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	407
AfaI	GTAC	1 cut(s)	386
AgsI	TTSAA	5 cut(s)	64, 116, 227, 291, 318
AjnI	CCWGG	2 cut(s)	103, 235
AluBI	AGCT	3 cut(s)	14, 159, 260
AluI	AGCT	3 cut(s)	14, 159, 260
AlwI	GGATC	1 cut(s)	407
ApeKI	GCWGC	4 cut(s)	97, 156, 257, 491
ArsI	GACNNNNNNTTYG	4 cut(s)	43, 75, 182, 214
AsuHPI	GGTGA	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	395
BbvI	GCAGC	4 cut(s)	109, 168, 269, 503
BciT130I	CCWGG	2 cut(s)	105, 237
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	4 cut(s)	98, 157, 258, 492
BlsI	GCNGC	4 cut(s)	99, 158, 259, 493
Bme1390I	CCNGG	2 cut(s)	105, 237
BmrFI	CCNGG	2 cut(s)	105, 237
BmsI	GCATC	5 cut(s)	43, 84, 152, 253, 478
Bpu14I	TTCGAA	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	105, 237
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	49, 334
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	4 cut(s)	109, 168, 269, 503
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	412, 496
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	407
BspT104I	TTCGAA	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	2 cut(s)	412, 496
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	105, 237
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	49, 334
BstKTI	GATC	2 cut(s)	415, 499
BstMBI	GATC	2 cut(s)	412, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	105, 237
BstSCI	CCNGG	2 cut(s)	103, 235
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	4 cut(s)	109, 168, 269, 503
BtsCI	GGATG	2 cut(s)	49, 334
BtsIMutI	CAGTG	2 cut(s)	441, 506
Cac8I	GCNNGC	1 cut(s)	276
CsiI	ACCWGGT	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	3 cut(s)	91, 325, 455
CviJI	RGCY	4 cut(s)	14, 100, 159, 260
CviKI_1	RGCY	4 cut(s)	14, 100, 159, 260
CviQI	GTAC	1 cut(s)	385
DpnI	GATC	2 cut(s)	414, 498
DpnII	GATC	2 cut(s)	412, 496
Eco130I	CCWWGG	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	103, 235
EcoT14I	CCWWGG	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	94, 328, 458
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	90, 324, 454
FauNDI	CATATG	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	98, 157, 258, 492
FokI	GGATG	2 cut(s)	56, 341
Fsp4HI	GCNGC	4 cut(s)	98, 157, 258, 492
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	4 cut(s)	98, 157, 258, 492
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	94, 328, 458
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188III	TCNNGA	2 cut(s)	49, 318
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	118, 213
HpyCH4V	TGCA	8 cut(s)	34, 97, 143, 170, 180, 244, 257, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	94, 328, 458
Kzo9I	GATC	2 cut(s)	412, 496
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	90, 117, 201, 222, 249, 288, 326, 447
Lsp1109I	GCAGC	4 cut(s)	109, 168, 269, 503
LweI	GCATC	5 cut(s)	43, 84, 152, 253, 478
MabI	ACCWGGT	1 cut(s)	103
MaeI	CTAG	1 cut(s)	215
MalI	GATC	2 cut(s)	414, 498
MboI	GATC	2 cut(s)	412, 496
MboII	GAAGA	2 cut(s)	80, 384
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	4 cut(s)	73, 297, 342, 426
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	2 cut(s)	161, 333
MslI	CAYNNNNRTG	2 cut(s)	89, 175
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	105, 237
MvaI	CCWGG	2 cut(s)	105, 237
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	2 cut(s)	412, 496
NlaIII	CATG	3 cut(s)	94, 328, 458
NsiI	ATGCAT	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	99, 158, 259, 493
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	103, 235
PspGI	CCWGG	2 cut(s)	103, 235
PstI	CTGCAG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
RseI	CAYNNNNRTG	2 cut(s)	89, 175
SaqAI	TTAA	2 cut(s)	161, 333
SatI	GCNGC	4 cut(s)	98, 157, 258, 492
Sau3AI	GATC	2 cut(s)	412, 496
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	2 cut(s)	105, 237
SetI	ASST	7 cut(s)	16, 109, 161, 224, 262, 270, 360
SexAI	ACCWGGT	1 cut(s)	103
SfaNI	GCATC	5 cut(s)	43, 84, 152, 253, 478
SfcI	CTRYAG	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	89, 175
Sse9I	AATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	103, 235
StyI	CCWWGG	1 cut(s)	423
TaqI	TCGA	1 cut(s)	395
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	161, 333
Tru9I	TTAA	2 cut(s)	161, 333
TscAI	CASTG	2 cut(s)	441, 506
TseI	GCWGC	4 cut(s)	97, 156, 257, 491
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	441, 506
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.