MD16G1163300.v1.1

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
13400343 .. 13406469
6127 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1163300.v1.1.491

Sequence Viewer

Length: 264 bp
ATGTATACAACTATTTGCACAAGACCTGACATTGCTTTTATAGTGGGAGTGTTAGGTAGGTTTCAAGCAAATCCAGGAGAGTTACATTGGGTAGCAGCGAAGAAGGTTTTAAGGTACCTGCAAAGAACCAAGAGTTACGTCCACTGGAAAGCTTGGTGCAATGGCTTCAAGTTCTGGAACTGGTACAGATTGGGTAGCAGCGAAGAAGGTTTTAAGGTACCTGCAAAGAACCAAGAGTTACATGTTGGTTTATGGCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

88

Amino Acids

10.32

Weight (kDa)

9.95

Isoelectric Point (pI)

23.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 126, 229
Acc65I GGTACC 2 cut(s) 114, 217
AccB1I GGYRCC 2 cut(s) 114, 217
AccI GTMKAC 1 cut(s) 5
AfaI GTAC 3 cut(s) 116, 185, 219
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 2 cut(s) 65, 169
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 95, 198
Asp718I GGTACC 2 cut(s) 114, 217
BanI GGYRCC 2 cut(s) 114, 217
BbvI GCAGC 2 cut(s) 107, 210
BciT130I CCWGG 1 cut(s) 75
BfuAI ACCTGC 2 cut(s) 126, 229
BisI GCNGC 2 cut(s) 96, 199
BlsI GCNGC 2 cut(s) 97, 200
Bme1390I CCNGG 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 116, 219
BmrFI CCNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 149, 185
Bse3DI GCAATG 2 cut(s) 30, 166
BseBI CCWGG 1 cut(s) 75
BseMI GCAATG 2 cut(s) 30, 166
BseNI ACTGG 2 cut(s) 149, 185
BseXI GCAGC 2 cut(s) 107, 210
BshNI GGYRCC 2 cut(s) 114, 217
BspLI GGNNCC 2 cut(s) 116, 219
BspMI ACCTGC 2 cut(s) 126, 229
BspT107I GGYRCC 2 cut(s) 114, 217
BsrDI GCAATG 2 cut(s) 30, 166
BsrI ACTGG 2 cut(s) 149, 185
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 75
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 107, 210
BstZ17I GTATAC 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 2 cut(s) 126, 229
Csp6I GTAC 3 cut(s) 115, 184, 218
CviAII CATG 1 cut(s) 242
CviJI RGCY 2 cut(s) 152, 165
CviKI_1 RGCY 2 cut(s) 152, 165
CviQI GTAC 3 cut(s) 115, 184, 218
EcoRII CCWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 245
FaiI YATR 4 cut(s) 6, 41, 243, 253
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 96, 199
Fsp4HI GCNGC 2 cut(s) 96, 199
GluI GCNGC 2 cut(s) 96, 199
Hin1II CATG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 150
Hpy166II GTNNAC 2 cut(s) 6, 142
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 2 cut(s) 6, 142
HpyAV CCTTC 2 cut(s) 97, 200
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 18, 121, 159, 224
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 245
KpnI GGTACC 2 cut(s) 118, 221
LpnPI CCDG 8 cut(s) 39, 60, 87, 130, 131, 160, 166, 234
Lsp1109I GCAGC 2 cut(s) 107, 210
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 81, 134, 237
MboII GAAGA 2 cut(s) 112, 215
MseI TTAA 2 cut(s) 110, 213
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 116, 219
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 2 cut(s) 97, 200
PscI ACATGT 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 116, 219
RsaI GTAC 3 cut(s) 116, 185, 219
RsaNI GTAC 3 cut(s) 115, 184, 218
SaqAI TTAA 2 cut(s) 110, 213
SatI GCNGC 2 cut(s) 96, 199
ScrFI CCNGG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 73
TaiI ACGT 1 cut(s) 141
Tru1I TTAA 2 cut(s) 110, 213
Tru9I TTAA 2 cut(s) 110, 213
TscAI CASTG 1 cut(s) 149
TseI GCWGC 2 cut(s) 95, 198
TspRI CASTG 1 cut(s) 149
XceI RCATGY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.