FvH4_6g21376

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001006
Physical Location & Seq
Reverse (-)
14970660 .. 14971370
711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21376.t1

Sequence Viewer

Length: 711 bp
ATGACTTCGATTAGAGTCATTTTGGGCATGGCTGTGAGCATGAATCTTGAGGTGGAGCAAATGGATGTGAAGACTGCATTTCTTCACGGTGATTTAGAAGAAGAATTATACATGGAGCAACCAGAAGGCTTTGAAGTCAACGGAAAGGAGCATATGGTTTGCAAGTTGAAGAAAAGCTTGTACGGATTAAAGCAAGCACCAAGACAGTGGTACAAGAAGTTTGACTCCTTCATGGGGAGTCATGGGTACAAGAAATCATCAGCTGATCCTTGTGTGTATATTCAACAATCCGTTGGAGGTAATTTTATCATCTTACTACTCTATGTAGATGATATGTTGATTGTCAGCAAAGATACTACTATGATTCAGCAGTTAAAAACAGATTTGTCAGAGTCCTTTGATATGAAGGATTTGGGACCAGCCAAGCGGATTTTGGGCATGGAGATTGCCCGTGATCGAGGGAATAAGAAATTGTGGTTATCACAAGAAAAGTACATCGAGAAGGTACTGGAGAGGTTCCATATGGAGAAAGCAACACCAGTTGCTACTCCACTTGCGAGTCACATGAAGCTCAGCTCAAAGCAGAGTCCTACAAGTCAGAAGGAAGAGGAAGAAAATGGCAACAATGCCATATGCCTCAGTAGTAGGGAGCTTGATGTACGTGATGGTTTGTACCAAACCAGACATAACACATGCAGTTGGTGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

237

Amino Acids

27.0

Weight (kDa)

6.33

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 185 2.6e-56 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 260
AfaI GTAC 7 cut(s) 182, 212, 248, 494, 507, 660, 674
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 3 cut(s) 134, 169, 284
AluBI AGCT 5 cut(s) 177, 263, 571, 576, 652
AluI AGCT 5 cut(s) 177, 263, 571, 576, 652
AlwI GGATC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 1 cut(s) 659
BlpI GCTNAGC 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 417, 518
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 662
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 513, 539
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 586, 652
BseNI ACTGG 2 cut(s) 513, 539
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 429
Bsp143I GATC 2 cut(s) 265, 454
Bsp1720I GCTNAGC 1 cut(s) 572
BspACI CCGC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 585, 651
BspLI GGNNCC 2 cut(s) 417, 518
BspPI GGATC 1 cut(s) 260
BsrI ACTGG 2 cut(s) 513, 539
BssMI GATC 2 cut(s) 265, 454
Bst4CI ACNGT 2 cut(s) 89, 207
Bst6I CTCTTC 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 572, 638
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 268, 457
BstMBI GATC 2 cut(s) 265, 454
BstNSI RCATGY 1 cut(s) 696
BstV2I GAAGAC 1 cut(s) 77
BstXI CCANNNNNNTGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 7 cut(s) 181, 211, 247, 493, 506, 659, 673
CviAII CATG 8 cut(s) 28, 40, 112, 232, 242, 439, 565, 693
CviJI RGCY 8 cut(s) 32, 129, 177, 263, 422, 571, 576, 652
CviKI_1 RGCY 8 cut(s) 32, 129, 177, 263, 422, 571, 576, 652
CviQI GTAC 7 cut(s) 181, 211, 247, 493, 506, 659, 673
DdeI CTNAG 2 cut(s) 572, 638
DpnI GATC 2 cut(s) 267, 456
DpnII GATC 2 cut(s) 265, 454
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 416
FaeI CATG 8 cut(s) 31, 43, 115, 235, 245, 442, 568, 696
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 1 cut(s) 429
FatI CATG 8 cut(s) 27, 39, 111, 231, 241, 438, 564, 692
FauNDI CATATG 3 cut(s) 153, 522, 632
FokI GGATG 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 530
Hin1II CATG 8 cut(s) 31, 43, 115, 235, 245, 442, 568, 696
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 175
HinfI GANTC 8 cut(s) 15, 43, 224, 238, 364, 392, 559, 586
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 391, 600
Hpy188III TCNNGA 2 cut(s) 47, 499
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 5 cut(s) 119, 238, 400, 496, 595
HpyCH4III ACNGT 2 cut(s) 89, 207
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 3 cut(s) 77, 162, 696
HpyF3I CTNAG 2 cut(s) 572, 638
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 8 cut(s) 31, 43, 115, 235, 245, 442, 568, 696
Kzo9I GATC 2 cut(s) 265, 454
LmnI GCTCC 4 cut(s) 55, 115, 148, 649
LpnPI CCDG 5 cut(s) 135, 432, 494, 552, 694
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 1 cut(s) 560
MalI GATC 2 cut(s) 267, 456
MboI GATC 2 cut(s) 265, 454
MboII GAAGA 7 cut(s) 74, 82, 110, 113, 181, 617, 623
MluCI AATT 3 cut(s) 104, 301, 470
MlyI GAGTC 6 cut(s) 24, 218, 247, 401, 568, 595
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 6 cut(s) 43, 290, 452, 507, 601, 647
MseI TTAA 2 cut(s) 188, 374
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 263
NdeI CATATG 3 cut(s) 153, 522, 632
NdeII GATC 2 cut(s) 265, 454
NlaIII CATG 8 cut(s) 31, 43, 115, 235, 245, 442, 568, 696
NlaIV GGNNCC 2 cut(s) 417, 518
NmuCI GTSAC 1 cut(s) 560
NspI RCATGY 1 cut(s) 696
PfeI GAWTC 2 cut(s) 43, 364
PleI GAGTC 6 cut(s) 23, 218, 246, 400, 567, 594
PpsI GAGTC 6 cut(s) 23, 218, 246, 400, 567, 594
Ppu21I YACGTR 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 417, 518
PspPI GGNCC 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 7 cut(s) 182, 212, 248, 494, 507, 660, 674
RsaNI GTAC 7 cut(s) 181, 211, 247, 493, 506, 659, 673
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 188, 374
Sau3AI GATC 2 cut(s) 265, 454
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 6 cut(s) 24, 218, 247, 401, 568, 595
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 3 cut(s) 104, 301, 470
SsiI CCGC 1 cut(s) 427
TaaI ACNGT 2 cut(s) 89, 207
TaiI ACGT 1 cut(s) 664
TaqI TCGA 3 cut(s) 8, 457, 498
TasI AATT 3 cut(s) 104, 301, 470
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 2 cut(s) 43, 364
Tru1I TTAA 2 cut(s) 188, 374
Tru9I TTAA 2 cut(s) 188, 374
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 4 cut(s) 56, 220, 419, 581
TspGWI ACGGA 3 cut(s) 156, 198, 280
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 416
XceI RCATGY 1 cut(s) 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.