Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Forward (+)

23097175 .. 23098844

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATGGCTTTAGTTGCTCACTATGATCTTGAGCTTCATCAGATGGATGTAAAAACGGCATTTTTAAATGGTGATTTGAGTGAAGAAATATATATGGCGCAGCCTGATGGTTTTGTGGCAAAAGACAATGAAGATAAGGTATGCAGATTAAGAAAATCAATCTATGGTTTAAAACAGGCTTCCAGGCAATGGTATATTAAATTTGATTCAGTGATTACTTCATATGGTTTTGCTGAAAACAGACTAGATGAGTGTATATACATGAAGGTCATTGGAGTAGTTGATTCTATTGAGAGACCTATGAAGTTATACTGCGATAATGCAGCTGCAGTATTCTTTGCTAAGAATAATAAAAGATCCACAGCTTCCAAGAATATTGATGTCAAGTACTTTGCCGTTAGAGAAAGCATAAGAGATGATGAGATTGAAATCATTAAGATTGGCACTCAAGATCAACTAGCCGATCCACTTACAAAACCCTTAGCAGTTAGTTCTTTTCAGAATCATGTTAAAAATATGGGGATCTTATCAAGTTTTGATGCTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS RVT_2

Protein Analysis

183

Amino Acids

20.84

Weight (kDa)

5.44

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 106	4.1e-28	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	189
AclWI	GGATC	3 cut(s)	351, 458, 530
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	3 cut(s)	34, 326, 365
AluI	AGCT	3 cut(s)	34, 326, 365
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	351, 458, 530
ApeKI	GCWGC	3 cut(s)	100, 323, 326
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	112, 313, 335
BccI	CCATC	2 cut(s)	37, 101
BceAI	ACGGC	2 cut(s)	72, 380
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	245, 458
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	3 cut(s)	101, 324, 327
BlsI	GCNGC	3 cut(s)	102, 325, 328
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	2 cut(s)	50, 432
BsaBI	GATNNNNATC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	112, 313, 335
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	5 cut(s)	25, 356, 451, 463, 522
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	3 cut(s)	351, 458, 530
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	194
BssMI	GATC	5 cut(s)	25, 356, 451, 463, 522
Bst2UI	CCWGG	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	342, 481
BstF5I	GGATG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	5 cut(s)	28, 359, 454, 466, 525
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	5 cut(s)	25, 356, 451, 463, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	112, 313, 335
BstX2I	RGATCY	2 cut(s)	356, 522
BstYI	RGATCY	2 cut(s)	356, 522
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	262, 506
CviJI	RGCY	7 cut(s)	8, 34, 103, 179, 326, 365, 461
CviKI_1	RGCY	7 cut(s)	8, 34, 103, 179, 326, 365, 461
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	342, 481
DpnI	GATC	5 cut(s)	27, 358, 453, 465, 524
DpnII	GATC	5 cut(s)	25, 356, 451, 463, 522
DraI	TTTAAA	2 cut(s)	66, 171
Eco31I	GGTCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	265, 509
FatI	CATG	2 cut(s)	261, 505
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	101, 324, 327
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	101, 324, 327
FspBI	CTAG	2 cut(s)	245, 458
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	101, 324, 327
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	265, 509
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	3 cut(s)	206, 284, 502
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	42, 501
Hpy188III	TCNNGA	2 cut(s)	29, 449
HpyAV	CCTTC	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	144, 323, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	342, 481
Hsp92II	CATG	2 cut(s)	265, 509
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	5 cut(s)	25, 356, 451, 463, 522
LpnPI	CCDG	4 cut(s)	117, 161, 169, 196
Lsp1109I	GCAGC	3 cut(s)	112, 313, 335
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	245, 458
MalI	GATC	5 cut(s)	27, 358, 453, 465, 524
MboI	GATC	5 cut(s)	25, 356, 451, 463, 522
MboII	GAAGA	2 cut(s)	95, 143
MflI	RGATCY	2 cut(s)	356, 522
MluCI	AATT	1 cut(s)	200
MseI	TTAA	6 cut(s)	65, 149, 170, 198, 435, 510
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	5 cut(s)	25, 356, 451, 463, 522
NlaIII	CATG	2 cut(s)	265, 509
PfeI	GAWTC	3 cut(s)	206, 284, 502
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	102, 325, 328
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	356, 522
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	6 cut(s)	65, 149, 170, 198, 435, 510
SatI	GCNGC	3 cut(s)	101, 324, 327
Sau3AI	GATC	5 cut(s)	25, 356, 451, 463, 522
ScaI	AGTACT	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	6 cut(s)	36, 141, 270, 301, 328, 367
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	29, 447
SmoI	CTYRAG	2 cut(s)	29, 447
Sse9I	AATT	1 cut(s)	200
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	2 cut(s)	245, 458
StyD4I	CCNGG	1 cut(s)	182
TasI	AATT	1 cut(s)	200
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	206, 284, 502
Tru1I	TTAA	6 cut(s)	65, 149, 170, 198, 435, 510
Tru9I	TTAA	6 cut(s)	65, 149, 170, 198, 435, 510
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	3 cut(s)	100, 323, 326
TspDTI	ATGAA	5 cut(s)	26, 144, 210, 278, 317
TspRI	CASTG	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	200
XspI	CTAG	2 cut(s)	245, 458
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.