pycom06g06360

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001006
Physical Location & Seq
Reverse (-)
9955146 .. 9958409
3264 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06360.2

Sequence Viewer

Length: 648 bp
ATGATTAAGTCCATTCGGATTTTGCTTGCTATAGCTGCCACGTACCATGATTATGAAATCTGGCAAATGGACGTGAAGACAACCTTTCTGAACGGCTACCTAGAGGAAGAGCTTTATATGGCTCAACCCAAAGGTTTCGTGTCCAAGTCTGAAAAGACTAAGGTATGCAAGCTTCAGAGGTCCATTTATGGACTTAAGCAAGCCTCCAGGAGCTGGAACATTCGTTTTGATACTGAAATCAAATCATTTGGTTTTATTCAAAACGAAGACGACAATTGTGTTTATCAAAAAGTCGTTGGGGAAGCAGTTGTATTCCTAGTGTTATATGTAGATGACATATTACTATTCGGGAATGACACTGCAGTACTTTCTTCTGTAAAAGTGTGGTTGTCCAAAACCTTCCACATGAAAGATTTAGGAGATGCATCTTATGTACTTGGGATAAAGCTCTATCGTGATAGATCCAGAAAATTAATTGGATTATCCCAATCTATGTACATTGATAAGGTGCTAAGTAGGTTCCAGATGGAGCAATCTAAGAAAGGTATTCTTCCTGTAGGACATGGAATTCATCTTTCTAAGTCCATGGGACCTAAGACTCCTGAAGAGATACTGCATATGAATATGATTCCTTATGCTTCGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

216

Amino Acids

24.65

Weight (kDa)

9.03

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 213
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 2 cut(s) 158, 624
AfaI GTAC 4 cut(s) 44, 366, 435, 497
AfiI CCNNNNNNNGG 1 cut(s) 213
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 260
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 5 cut(s) 35, 112, 172, 213, 448
AluI AGCT 5 cut(s) 35, 112, 172, 213, 448
AlwI GGATC 1 cut(s) 456
AlwNI CAGNNNCTG 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 567
AseI ATTAAT 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 180, 590
AvaII GGWCC 2 cut(s) 180, 590
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 2 cut(s) 83, 273
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 520
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 1 cut(s) 208
BfaI CTAG 2 cut(s) 101, 317
BfmI CTRYAG 3 cut(s) 30, 360, 555
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 180, 590
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 180, 590
BmiI GGNNCC 2 cut(s) 521, 591
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 412, 434
BpiI GAAGAC 2 cut(s) 83, 273
BpmI CTGGAG 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 585
Bsc4I CCNNNNNNNGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 585
BseLI CCNNNNNNNGG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 22
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 1 cut(s) 461
Bsp19I CCATGG 1 cut(s) 585
BspLI GGNNCC 2 cut(s) 521, 591
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 102
BspTI CTTAAG 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 102, 600
BstAFI CTTAAG 1 cut(s) 194
BstAUI TGTACA 1 cut(s) 495
BstBAI YACGTR 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 27, 170, 201
BstDEI CTNAG 5 cut(s) 159, 512, 537, 579, 594
BstDSI CCRYGG 1 cut(s) 585
BstKTI GATC 1 cut(s) 464
BstMBI GATC 1 cut(s) 461
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 3 cut(s) 30, 360, 555
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 2 cut(s) 83, 273
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 27, 170, 201
CaiI CAGNNNCTG 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 180, 590
Csp6I GTAC 4 cut(s) 43, 365, 434, 496
CviAII CATG 4 cut(s) 47, 406, 563, 586
CviJI RGCY 8 cut(s) 35, 96, 112, 122, 172, 203, 213, 448
CviKI_1 RGCY 8 cut(s) 35, 96, 112, 122, 172, 203, 213, 448
CviQI GTAC 4 cut(s) 43, 365, 434, 496
DdeI CTNAG 5 cut(s) 159, 512, 537, 579, 594
DpnI GATC 1 cut(s) 463
DpnII GATC 1 cut(s) 461
Eam1104I CTCTTC 2 cut(s) 102, 600
EarI CTCTTC 2 cut(s) 102, 600
Eco130I CCWWGG 1 cut(s) 585
Eco47I GGWCC 2 cut(s) 180, 590
Eco57I CTGAAG 2 cut(s) 158, 624
EcoO109I RGGNCCY 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 585
EcoT22I ATGCAT 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 4 cut(s) 50, 409, 566, 589
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 534, 566
FaqI GGGAC 1 cut(s) 603
FatI CATG 4 cut(s) 46, 405, 562, 585
FauNDI CATATG 1 cut(s) 618
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 101, 317
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 190
Hin1II CATG 4 cut(s) 50, 409, 566, 589
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 598, 628
Hpy188I TCNGA 4 cut(s) 18, 90, 151, 177
Hpy188III TCNNGA 5 cut(s) 349, 455, 465, 523, 602
HpyAV CCTTC 1 cut(s) 409
HpyCH4IV ACGT 2 cut(s) 41, 72
HpyCH4V TGCA 4 cut(s) 168, 362, 425, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 5 cut(s) 159, 512, 537, 579, 594
HpySE526I ACGT 2 cut(s) 41, 72
Hsp92II CATG 4 cut(s) 50, 409, 566, 589
Kzo9I GATC 1 cut(s) 461
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 210, 529
LpnPI CCDG 8 cut(s) 46, 193, 199, 220, 478, 536, 567, 615
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 412, 434
MaeI CTAG 2 cut(s) 101, 317
MaeII ACGT 2 cut(s) 41, 72
MalI GATC 1 cut(s) 463
MboI GATC 1 cut(s) 461
MboII GAAGA 6 cut(s) 88, 119, 278, 363, 542, 617
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 1 cut(s) 461
MluCI AATT 4 cut(s) 274, 470, 474, 567
MlyI GAGTC 1 cut(s) 592
MnlI CCTC 3 cut(s) 97, 171, 214
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 3 cut(s) 6, 195, 473
MslI CAYNNNNRTG 1 cut(s) 51
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 585
NdeI CATATG 1 cut(s) 618
NdeII GATC 1 cut(s) 461
NlaIII CATG 4 cut(s) 50, 409, 566, 589
NlaIV GGNNCC 2 cut(s) 521, 591
NsiI ATGCAT 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 628
PflMI CCANNNNNTGG 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Ppu21I YACGTR 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 590
PshBI ATTAAT 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 521, 591
PspPI GGNCC 2 cut(s) 180, 590
PspPPI RGGWCCY 1 cut(s) 590
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 4 cut(s) 44, 366, 435, 497
RsaNI GTAC 4 cut(s) 43, 365, 434, 496
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 6, 195, 473
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 461
Sau96I GGNCC 2 cut(s) 180, 590
ScaI AGTACT 1 cut(s) 366
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 1 cut(s) 208
SfaNI GCATC 2 cut(s) 412, 434
SfcI CTRYAG 3 cut(s) 30, 360, 555
SinI GGWCC 2 cut(s) 180, 590
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 274, 470, 474, 567
SspMI CTAG 2 cut(s) 101, 317
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 585
TaiI ACGT 2 cut(s) 44, 75
TasI AATT 4 cut(s) 274, 470, 474, 567
TatI WGTACW 3 cut(s) 364, 433, 495
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 3 cut(s) 6, 195, 473
Tru9I TTAA 3 cut(s) 6, 195, 473
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 4 cut(s) 69, 422, 560, 635
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 213
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 180, 590
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 1 cut(s) 567
XspI CTAG 2 cut(s) 101, 317
ZrmI AGTACT 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.