Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

5016865 .. 5018219

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTTAGTTGCACATTTTAACATGGAACTACATCAGATGGATGTTAAAACTTCTTTCTTGAATGGTGAATTGTATGAAGATATTTATATGAGGCAGCCTGAGGGTTTTATTGATGAAGGCAATGAGCACTTAGTGTGTAAACTTCAGAAATCTATCTATGGTTTGAAGCAAGCGTCTAGACAGTGGTATCTCAAGTTCGATTCAGTAATGGTGTCACATGGTTTTATCGAAAATCCACTAGATGAGTGTGTATACCTGAAAATTACCATTAAAGTAGTGGATTCCATTCACAGACCCTTGCAGATTTACTGTGATAATAGTGCAGCTGTGTTCTTTTCAAAGAACAATAAGAGATCCTCAAAAACTAAGTTTGTAGATCCTAAGCATCTTCTGGTTCAAGAGAAAGTGAAGCATGATGAAATTGTAGTTGATCATATTAGTGGAGATAACATGTTAGCAAACCCTTTTACAAAACCATTAGCAATTGGGGTTTTTAAGGAACATGTTATGAATATGGGATTGATTCAGTCATTTGACCTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

182

Amino Acids

20.96

Weight (kDa)

6.29

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 89	7e-25	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	351, 374
AcuI	CTGAAG	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	136
AflIII	ACRYGT	2 cut(s)	453, 505
AgsI	TTSAA	4 cut(s)	64, 169, 342, 401
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	351, 374
ApeKI	GCWGC	2 cut(s)	97, 326
AsuHPI	GGTGA	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	102
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	109, 338
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	542
BclI	TGATCA	1 cut(s)	433
BfaI	CTAG	2 cut(s)	180, 242
BisI	GCNGC	2 cut(s)	98, 327
BlsI	GCNGC	2 cut(s)	99, 328
Bme1390I	CCNGG	1 cut(s)	542
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	542
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	109, 338
BsgI	GTGCAG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	356, 379, 433
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	2 cut(s)	351, 374
BsrDI	GCAATG	1 cut(s)	130
BssMI	GATC	3 cut(s)	356, 379, 433
BssNAI	GTATAC	1 cut(s)	256
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	2 cut(s)	186, 314
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	4 cut(s)	102, 133, 369, 384
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	359, 382, 436
BstMBI	GATC	3 cut(s)	356, 379, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	2 cut(s)	457, 509
BstSCI	CCNGG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	109, 338
BstX2I	RGATCY	2 cut(s)	356, 379
BstYI	RGATCY	2 cut(s)	356, 379
BstZ17I	GTATAC	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	174
CseI	GACGC	1 cut(s)	165
CviAII	CATG	5 cut(s)	25, 221, 416, 454, 506
CviJI	RGCY	4 cut(s)	5, 100, 329, 545
CviKI_1	RGCY	4 cut(s)	5, 100, 329, 545
DdeI	CTNAG	4 cut(s)	102, 133, 369, 384
DpnI	GATC	3 cut(s)	358, 381, 435
DpnII	GATC	3 cut(s)	356, 379, 433
DraIII	CACNNNGTG	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	540
FaeI	CATG	5 cut(s)	28, 224, 419, 457, 509
FatI	CATG	5 cut(s)	24, 220, 415, 453, 505
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	98, 327
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	98, 327
FspBI	CTAG	2 cut(s)	180, 242
GluI	GCNGC	2 cut(s)	98, 327
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	28, 224, 419, 457, 509
HinfI	GANTC	3 cut(s)	203, 284, 526
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	143, 256
Hpy188I	TCNGA	2 cut(s)	39, 150
Hpy188III	TCNNGA	3 cut(s)	61, 180, 401
Hpy8I	GTNNAC	2 cut(s)	143, 256
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	186, 314
HpyCH4V	TGCA	3 cut(s)	14, 304, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	102, 133, 369, 384
Hsp92II	CATG	5 cut(s)	28, 224, 419, 457, 509
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	356, 379, 433
LpnPI	CCDG	4 cut(s)	114, 272, 380, 527
Lsp1109I	GCAGC	2 cut(s)	109, 338
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	180, 242
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	358, 381, 435
MboI	GATC	3 cut(s)	356, 379, 433
MboII	GAAGA	2 cut(s)	92, 383
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	356, 379
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	71, 264, 423, 486
MnlI	CCTC	3 cut(s)	87, 97, 370
MseI	TTAA	4 cut(s)	21, 48, 273, 498
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	542
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	356, 379, 433
NlaIII	CATG	5 cut(s)	28, 224, 419, 457, 509
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	2 cut(s)	457, 509
PciI	ACATGT	2 cut(s)	453, 505
PfeI	GAWTC	3 cut(s)	203, 284, 526
PkrI	GCNGC	2 cut(s)	99, 328
PscI	ACATGT	2 cut(s)	453, 505
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PsuI	RGATCY	2 cut(s)	356, 379
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	4 cut(s)	21, 48, 273, 498
SatI	GCNGC	2 cut(s)	98, 327
Sau3AI	GATC	3 cut(s)	356, 379, 433
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	3 cut(s)	261, 331, 543
SfaNI	GCATC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	71, 264, 423, 486
SspMI	CTAG	2 cut(s)	180, 242
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	186, 314
TaqI	TCGA	2 cut(s)	201, 231
TasI	AATT	4 cut(s)	71, 264, 423, 486
TfiI	GAWTC	3 cut(s)	203, 284, 526
Tru1I	TTAA	4 cut(s)	21, 48, 273, 498
Tru9I	TTAA	4 cut(s)	21, 48, 273, 498
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	2 cut(s)	97, 326
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	4 cut(s)	93, 132, 435, 527
TspRI	CASTG	1 cut(s)	191
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	2 cut(s)	457, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	180, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.