Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

46263317 .. 46264618

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTTTGGTTGCGCACTATAACATGGAACTACACCAAATGGACGTAAAAACTGCCTTTTTGAATGGAGATTTGCATGAGGATATTTATATGACACAACCTGAGGGATTTATTGCTTCTGGGAATGAAAGGTTAGTCTGCACCAGACCTGACATAGCCTACTCAGTTGGAATACTTGGAAGATTTCAAACTAATCCTGGACATGCACATTGGGTTGCTGGGAAAAAGGTCTTGAGATATTTGCAAAAAACCAAAGATTATATGCTAGTTGCTGCAGTGTTCTTTTCGAAGAACAATAAGAGATCTTCAAAATCTAAATTCGTGGATCCAAAATATCTGTTGGTAAGAGAGAAAGTAAAGCTTGATGAAATTAGTGTAGAGCATGTGTCTTCTGAGGATATGTTGGCTGATCCATTCACTAAACCATTATCTGTTGCGGTTTTTAAAGAACATGTTAAGAATATGGGTTTAGTTGAGTCTTTAGATGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

164

Amino Acids

18.6

Weight (kDa)

7.86

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 48	2.9e-11	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	15
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	3 cut(s)	320, 333, 404
AcsI	RAATTY	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	3 cut(s)	64, 188, 309
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
AlwI	GGATC	3 cut(s)	320, 333, 404
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	302
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	93, 177, 384
BseXI	GCAGC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	124
Bsp119I	TTCGAA	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	302, 325, 409
BspACI	CCGC	1 cut(s)	437
BspCNI	CTCAG	3 cut(s)	94, 176, 385
BspLI	GGNNCC	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	3 cut(s)	320, 333, 404
BspT104I	TTCGAA	1 cut(s)	287
BssMI	GATC	3 cut(s)	302, 325, 409
Bst2UI	CCWGG	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	102, 163, 393
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	305, 328, 412
BstMBI	GATC	3 cut(s)	302, 325, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	3 cut(s)	206, 386, 455
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	302, 325
BstYI	RGATCY	2 cut(s)	302, 325
Bsu36I	CCTNAGG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
CfoI	GCGC	1 cut(s)	16
CviAII	CATG	5 cut(s)	25, 77, 203, 383, 452
CviJI	RGCY	4 cut(s)	5, 158, 361, 407
CviKI_1	RGCY	4 cut(s)	5, 158, 361, 407
DdeI	CTNAG	3 cut(s)	102, 163, 393
DpnI	GATC	3 cut(s)	304, 327, 411
DpnII	GATC	3 cut(s)	302, 325, 409
DraI	TTTAAA	1 cut(s)	445
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	5 cut(s)	28, 80, 206, 386, 455
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FatI	CATG	5 cut(s)	24, 76, 202, 382, 451
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	222
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	5 cut(s)	28, 80, 206, 386, 455
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	1 cut(s)	476
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	5 cut(s)	76, 141, 206, 244, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	102, 163, 393
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	28, 80, 206, 386, 455
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	3 cut(s)	302, 325, 409
LpnPI	CCDG	7 cut(s)	105, 114, 157, 162, 183, 204, 210
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	45
MalI	GATC	3 cut(s)	304, 327, 411
MboI	GATC	3 cut(s)	302, 325, 409
MboII	GAAGA	4 cut(s)	192, 297, 301, 381
MflI	RGATCY	2 cut(s)	302, 325
MluCI	AATT	2 cut(s)	317, 369
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	73, 97, 388
MseI	TTAA	2 cut(s)	444, 456
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	302, 325, 409
NlaIII	CATG	5 cut(s)	28, 80, 206, 386, 455
NlaIV	GGNNCC	1 cut(s)	327
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	3 cut(s)	206, 386, 455
NspV	TTCGAA	1 cut(s)	287
PciI	ACATGT	1 cut(s)	451
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	302, 325
SaqAI	TTAA	2 cut(s)	444, 456
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	302, 325, 409
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	6 cut(s)	48, 103, 134, 151, 231, 363
SfcI	CTRYAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	317, 369
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	317, 369
Tru1I	TTAA	2 cut(s)	444, 456
Tru9I	TTAA	2 cut(s)	444, 456
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	141, 381
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	3 cut(s)	206, 386, 455
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.