Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

66163875 .. 66165131

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCCTAGTTGCACATTACAATTTAGAATTGCATCAAATGGATGTTAAAACTGCATTCTTAAATGGAGACTTACATGAGGATATCTACATGCTTAAGCCAGAAGGGTTCATAGAAGATGAAAAGAAGGTTTGCAAGCTTAACAAGTCGATTTATGGACTAAAGCAAGCATCCAGGCACTGGTATTTAAAGTTTGATGCTGTGATCTCTGACTTTGGATTTGAAGAAAACAAATTGGATGAATGTGTGTACTGCAAGGTTGTGGATTCAATTGAGAGGCCACTGGTTATATACTGTGACAATGCAGCAGCTGTGTTCTTTTCAAAGAACAACAGAAGAACAGCAGGGTCAAGGAATATAGATGTAAAGTATTTTTCAGTAAGAGAGAGTGTGAGGGATAATGAAATAGAAGTGATGAAGATTGGAACAAAAGAGCAACTTGCAGATCCACTGACAAAAGCATTACCAGTTTCTGTGTTTGTTAATCATGTAGAAAGCATGGGAATTTTAGATAGCATTAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS RVT_2

Protein Analysis

175

Amino Acids

20.04

Weight (kDa)

5.56

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 101	7e-29	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	504
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	224, 270, 324
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	2 cut(s)	139, 311
AluI	AGCT	2 cut(s)	139, 311
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	3 cut(s)	180, 311, 473
AoxI	GGCC	2 cut(s)	3, 278
ApeKI	GCWGC	2 cut(s)	305, 308
ApoI	RAATTY	1 cut(s)	504
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AseI	ATTAAT	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	317, 320
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	306, 309
BlsI	GCNGC	2 cut(s)	307, 310
Bme1390I	CCNGG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	43, 179, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	3 cut(s)	185, 288, 467
BseBI	CCWGG	1 cut(s)	175
BseGI	GGATG	3 cut(s)	49, 170, 244
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	185, 288, 467
BseXI	GCAGC	2 cut(s)	317, 320
BshFI	GGCC	2 cut(s)	5, 280
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	5, 280
Bsp143I	GATC	2 cut(s)	204, 445
BspANI	GGCC	2 cut(s)	5, 280
BspPI	GGATC	1 cut(s)	440
BspTI	CTTAAG	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	185, 288, 467
BssMI	GATC	2 cut(s)	204, 445
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	137, 168
BstF5I	GGATG	3 cut(s)	49, 170, 244
BstKTI	GATC	2 cut(s)	207, 448
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	204, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	317, 320
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	5, 280
BtsCI	GGATG	3 cut(s)	49, 170, 244
BtsIMutI	CAGTG	3 cut(s)	178, 281, 449
Cac8I	GCNNGC	2 cut(s)	137, 168
CaiI	CAGNNNCTG	3 cut(s)	180, 311, 473
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	4 cut(s)	77, 91, 488, 499
CviJI	RGCY	5 cut(s)	5, 100, 139, 280, 311
CviKI_1	RGCY	5 cut(s)	5, 100, 139, 280, 311
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	2 cut(s)	206, 447
DpnII	GATC	2 cut(s)	204, 445
DraI	TTTAAA	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	85
FaeI	CATG	4 cut(s)	80, 94, 491, 502
FaiI	YATR	9 cut(s)	78, 92, 113, 156, 290, 292, 359, 489, 500
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	4 cut(s)	76, 90, 487, 498
Fnu4HI	GCNGC	2 cut(s)	306, 309
FokI	GGATG	3 cut(s)	56, 157, 251
Fsp4HI	GCNGC	2 cut(s)	306, 309
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	306, 309
HaeIII	GGCC	2 cut(s)	5, 280
Hin1II	CATG	4 cut(s)	80, 94, 491, 502
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	98, 121
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	7 cut(s)	14, 34, 56, 135, 255, 305, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	80, 94, 491, 502
Kzo9I	GATC	2 cut(s)	204, 445
LpnPI	CCDG	7 cut(s)	114, 160, 166, 187, 269, 330, 480
Lsp1109I	GCAGC	2 cut(s)	317, 320
LweI	GCATC	3 cut(s)	43, 179, 187
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	206, 447
MboI	GATC	2 cut(s)	204, 445
MboII	GAAGA	4 cut(s)	128, 236, 348, 430
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	445
MluCI	AATT	5 cut(s)	22, 29, 233, 270, 504
MnlI	CCTC	3 cut(s)	73, 270, 387
MseI	TTAA	7 cut(s)	48, 62, 96, 141, 188, 483, 519
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	204, 445
NlaIII	CATG	4 cut(s)	80, 94, 491, 502
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	94
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	307, 310
PshBI	ATTAAT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	3 cut(s)	180, 311, 473
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	7 cut(s)	48, 62, 96, 141, 188, 483, 519
SatI	GCNGC	2 cut(s)	306, 309
Sau3AI	GATC	2 cut(s)	204, 445
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	4 cut(s)	132, 141, 261, 313
SfaNI	GCATC	3 cut(s)	43, 179, 187
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	5 cut(s)	22, 29, 233, 270, 504
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	149
TasI	AATT	5 cut(s)	22, 29, 233, 270, 504
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	7 cut(s)	48, 62, 96, 141, 188, 483, 519
Tru9I	TTAA	7 cut(s)	48, 62, 96, 141, 188, 483, 519
TscAI	CASTG	3 cut(s)	185, 288, 456
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	305, 308
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	5 cut(s)	100, 135, 255, 417, 431
TspRI	CASTG	3 cut(s)	185, 288, 456
Van91I	CCANNNNNTGG	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	1 cut(s)	504
XceI	RCATGY	1 cut(s)	94
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.