RchiOBHm_Chr6g0300011

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001006
Physical Location & Seq
Forward (+)
60999472 .. 61000271
800 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26940

Sequence Viewer

Length: 792 bp
ATGGAGAAGTGTGCAGCTGGAGAAGTTCCCATGTCCAAAGGAGATAAGTTAACCAAGAAGCAAAGTCCCAATAGTAATGTTGAAAAGGAAAATATGGAGTCAAAGCCTTATGCCAGACTTGTAGGAAGTCTCATGTATGCGCAAGTCTGCACTAGGCCAGACTTGTCTTTTGCAGTAGGGATTTTGTCAAGATTCCAATCTAATCCAGGCCATGAACATTGGGTAGCTGGGAAGAAAGTGTTGAGATACCTGCAGAGAACTAAAAGCCATATGCTAGTTTATAGGCAAGTGGAGGATCTGAAACTCATAGGATTCTCAGACTCGGATTTTGCAGGGAATTATCCAGACTCCAAGAAGTCGACTTGTGGATATGTGTTCATGCTTGCAGGAGGTGCTATTGCTTGGAAAACCATGAAACAAACACTTGTTTCAACTTCTACTATGCAAGCTGAATTTATTGCAGTATATGAAACTGTGTGTGAAGGACTTTGGATTAGGAATTTTCTCATGCAGACCAAAGTATTGAGTCACATTGTGGCTGGAACACTTGCGATTTATTGTGACAATGAGGCTGCAGTTTTCTTTAGCAAGAACAGTAAAAGGTCAAATAATTCCAAGCATATTGATCTAAAGTATTACAGTGTTAGAGAAAGAGTAAAGCATGGTGAAATAGCTGTTTTGAGTATTGACACAAATTCACAGCTAGCAGATCCTTTCACCAAGGCATTGTCAGTAGCAGCATTCCAGAAACATACAGCAAGCATTGGAATTTTAGCTAATATAGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

263

Amino Acids

29.25

Weight (kDa)

9.23

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 258
AccI GTMKAC 1 cut(s) 359
AclWI GGATC 2 cut(s) 303, 704
AcsI RAATTY 4 cut(s) 452, 499, 694, 768
AdeI CACNNNGTG 1 cut(s) 535
AgsI TTSAA 2 cut(s) 83, 432
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 6 cut(s) 17, 227, 449, 674, 703, 776
AluI AGCT 6 cut(s) 17, 227, 449, 674, 703, 776
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 303, 704
AoxI GGCC 2 cut(s) 155, 208
ApeKI GCWGC 3 cut(s) 14, 572, 737
ApoI RAATTY 4 cut(s) 452, 499, 694, 768
ArsI GACNNNNNNTTYG 4 cut(s) 152, 184, 311, 343
AspLEI GCGC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 677, 709
AsuNHI GCTAGC 1 cut(s) 703
BbvI GCAGC 3 cut(s) 26, 559, 749
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 3 cut(s) 153, 275, 704
BfmI CTRYAG 2 cut(s) 251, 573
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 3 cut(s) 15, 573, 738
BlsI GCNGC 3 cut(s) 16, 574, 739
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 775
BmtI GCTAGC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 720
Bse8I GATNNNNATC 1 cut(s) 196
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 720
BseJI GATNNNNATC 1 cut(s) 196
BseMII CTCAG 1 cut(s) 330
BseXI GCAGC 3 cut(s) 26, 559, 749
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 2 cut(s) 33, 133
BshFI GGCC 2 cut(s) 157, 210
BslFI GGGAC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 2 cut(s) 157, 210
Bsp143I GATC 3 cut(s) 295, 625, 709
BspANI GGCC 2 cut(s) 157, 210
BspCNI CTCAG 1 cut(s) 329
BspMAI CTGCAG 2 cut(s) 255, 577
BspMI ACCTGC 1 cut(s) 258
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 2 cut(s) 303, 704
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 3 cut(s) 295, 625, 709
BssT1I CCWWGG 1 cut(s) 720
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 475, 596, 641
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 384, 447, 705, 760
BstDEI CTNAG 2 cut(s) 316, 789
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 3 cut(s) 298, 628, 712
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 295, 625, 709
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 2 cut(s) 251, 573
BstV1I GCAGC 3 cut(s) 26, 559, 749
BstX2I RGATCY 2 cut(s) 295, 709
BstYI RGATCY 2 cut(s) 295, 709
BsuRI GGCC 2 cut(s) 157, 210
BtsIMutI CAGTG 1 cut(s) 646
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 4 cut(s) 384, 447, 705, 760
CfoI GCGC 1 cut(s) 142
CviAII CATG 7 cut(s) 31, 133, 212, 379, 412, 508, 662
DdeI CTNAG 2 cut(s) 316, 789
DpnI GATC 3 cut(s) 297, 627, 711
DpnII GATC 3 cut(s) 295, 625, 709
DraIII CACNNNGTG 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 7 cut(s) 34, 136, 215, 382, 415, 511, 665
FaqI GGGAC 1 cut(s) 51
FatI CATG 7 cut(s) 30, 132, 211, 378, 411, 507, 661
FauNDI CATATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 3 cut(s) 15, 573, 738
Fsp4HI GCNGC 3 cut(s) 15, 573, 738
FspBI CTAG 3 cut(s) 153, 275, 704
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
GluI GCNGC 3 cut(s) 15, 573, 738
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 157, 210
HhaI GCGC 1 cut(s) 142
Hin1II CATG 7 cut(s) 34, 136, 215, 382, 415, 511, 665
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 2 cut(s) 51, 360
HindII GTYRAC 2 cut(s) 51, 360
HinfI GANTC 6 cut(s) 98, 192, 312, 320, 347, 526
HpaI GTTAAC 1 cut(s) 51
HphI GGTGA 2 cut(s) 677, 709
Hpy166II GTNNAC 2 cut(s) 51, 360
Hpy188I TCNGA 3 cut(s) 300, 319, 325
Hpy188III TCNNGA 3 cut(s) 189, 344, 745
Hpy8I GTNNAC 2 cut(s) 51, 360
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 3 cut(s) 475, 596, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 316, 789
Hsp92II CATG 7 cut(s) 34, 136, 215, 382, 415, 511, 665
HspAI GCGC 1 cut(s) 140
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 295, 625, 709
Lsp1109I GCAGC 3 cut(s) 26, 559, 749
LweI GCATC 1 cut(s) 775
MaeI CTAG 3 cut(s) 153, 275, 704
MaeIII GTNAC 2 cut(s) 527, 560
MalI GATC 3 cut(s) 297, 627, 711
MboI GATC 3 cut(s) 295, 625, 709
MboII GAAGA 1 cut(s) 244
MflI RGATCY 2 cut(s) 295, 709
MluCI AATT 6 cut(s) 337, 452, 499, 610, 694, 768
MlyI GAGTC 4 cut(s) 107, 314, 341, 535
MnlI CCTC 3 cut(s) 286, 383, 562
MseI TTAA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 295, 625, 709
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 7 cut(s) 34, 136, 215, 382, 415, 511, 665
NmuCI GTSAC 2 cut(s) 527, 560
NsbI TGCGCA 1 cut(s) 141
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 2 cut(s) 192, 312
PkrI GCNGC 3 cut(s) 16, 574, 739
PleI GAGTC 4 cut(s) 106, 314, 341, 534
PpsI GAGTC 4 cut(s) 106, 314, 341, 534
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 205
PstI CTGCAG 2 cut(s) 255, 577
PsuI RGATCY 2 cut(s) 295, 709
PvuII CAGCTG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 3 cut(s) 15, 573, 738
Sau3AI GATC 3 cut(s) 295, 625, 709
SchI GAGTC 4 cut(s) 107, 314, 341, 535
ScrFI CCNGG 1 cut(s) 207
SetI ASST 9 cut(s) 19, 229, 252, 394, 451, 605, 676, 705, 778
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 2 cut(s) 251, 573
Sse9I AATT 6 cut(s) 337, 452, 499, 610, 694, 768
SspMI CTAG 3 cut(s) 153, 275, 704
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 3 cut(s) 475, 596, 641
TaqI TCGA 1 cut(s) 359
TasI AATT 6 cut(s) 337, 452, 499, 610, 694, 768
TfiI GAWTC 2 cut(s) 192, 312
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 2 cut(s) 527, 560
TseI GCWGC 3 cut(s) 14, 572, 737
Tsp45I GTSAC 2 cut(s) 527, 560
TspDTI ATGAA 4 cut(s) 228, 367, 428, 483
TspRI CASTG 1 cut(s) 646
XapI RAATTY 4 cut(s) 452, 499, 694, 768
XmiI GTMKAC 1 cut(s) 359
XspI CTAG 3 cut(s) 153, 275, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.