RchiOBHm_Chr5g0066231

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001006
Physical Location & Seq
Forward (+)
72376861 .. 72377892
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34200

Sequence Viewer

Length: 1032 bp
ATGAAAATCAGCGGCAGAAATTTTATTTTTCTGGTGTTATATGTTGATGATATTCTGTTGGCAAGCACTGATAAAGGGTTATTGCAGCAAACAAAGCATTTTCTTTCTGAAAATTTTGACATGAAGGATTTGGGAGATGCTTCATATGTTCTAGGGATTGAAATTACCAGGGATCGATCTAAACATCTTTTAGGTTTATCTCAGCAAGCCTACATTTCAAAAGTGTTGAAGAGATTTGAAATGCATACTTGTTCACCTGGAGCTGCACCTATGTCAAAAGGTGACAAGTTGAACAAAAATCAGTGTCCTAAGAATGAGTTAGAGAAGGAAGACATGAAAACCAAACCTTATTCCAGATTGGTGGGAAGCCTAATCTATGCACAAGTGTGCACTAGGCCTGATTTAGCCTATGCAGTGGGTATGTTGGCAAGATTTCAGTCAAATCCAGGACATGAACACTGGATTGCTGGAAAGAAGGTGTTAAGATATCTTCAGAAAACCAAGGGTTATAGTTTGGTGTATAGAAGAGTCAAAGATCTTGAAGTGGAAGGTTATTCTGATGCAGATTTTGCAGGACATTTTCCAACTTCAGGAAAATCGACATCAGGCTATGTCTTTATGTTAGCTGGGGGTGCTATAGCTTGGAAGAGTGTAAAGCAAACACAAATAGCAACCTCTACCATGATGGCAGAATTTATTGCTATTTATGAGGCTACATGTCAGGGACTATGGTTGAAGAATTTTCTTGCACAGACTAAACTAGTTGATAGCATCATTTCAAGACCCTTGAAGATTCATTATGACAACTCTGCAGCAGTTTATTTCACAAAGAATAACAAGAGATCCACCAACTCCAAGCACATTGACTTGAAGTATTATAGTGTCCGAGAGAGAGTAAAGCATAATGAGTTGATTATTGCCAAAATCAACACTTTGAACCAATTAGCAGACCCTTTCACTAAGCCATTAACCATTGCAGCTTTTGAAAAACACACTGAAAACATAGGCATTCTGCCAACTATAGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2

Protein Analysis

343

Amino Acids

38.72

Weight (kDa)

9.41

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 3 - 92 3.6e-18 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AclWI GGATC 2 cut(s) 180, 837
AcsI RAATTY 4 cut(s) 19, 112, 692, 739
AcuI CTGAAG 2 cut(s) 476, 573
AfiI CCNNNNNNNGG 1 cut(s) 590
AflIII ACRYGT 1 cut(s) 716
AhlI ACTAGT 1 cut(s) 760
AjnI CCWGG 3 cut(s) 167, 256, 445
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 4 cut(s) 263, 626, 641, 980
AluI AGCT 4 cut(s) 263, 626, 641, 980
Alw21I GWGCWC 1 cut(s) 392
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 2 cut(s) 180, 837
AoxI GGCC 1 cut(s) 395
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 4 cut(s) 85, 263, 812, 977
ApoI RAATTY 4 cut(s) 19, 112, 692, 739
AsuHPI GGTGA 2 cut(s) 246, 293
BaeGI GKGCMC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 4 cut(s) 97, 250, 824, 989
BccI CCATC 1 cut(s) 679
BciT130I CCWGG 3 cut(s) 169, 258, 447
BcuI ACTAGT 1 cut(s) 760
BfaI CTAG 3 cut(s) 152, 393, 761
BfmI CTRYAG 3 cut(s) 636, 810, 1020
BglII AGATCT 1 cut(s) 535
BisI GCNGC 5 cut(s) 13, 86, 264, 813, 978
BlsI GCNGC 5 cut(s) 14, 87, 265, 814, 979
Bme1390I CCNGG 3 cut(s) 169, 258, 447
BmrFI CCNGG 3 cut(s) 169, 258, 447
BmsI GCATC 3 cut(s) 127, 550, 780
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 168, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse1I ACTGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 972
BseBI CCWGG 3 cut(s) 169, 258, 447
BseCI ATCGAT 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 168, 501
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 4 cut(s) 97, 250, 824, 989
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 397
BshVI ATCGAT 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 392
BslFI GGGAC 1 cut(s) 738
BslI CCNNNNNNNGG 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 738
BsmI GAATGC 1 cut(s) 1008
BsnI GGCC 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 4 cut(s) 172, 176, 535, 842
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 214
BspDI ATCGAT 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 814
BspPI GGATC 2 cut(s) 180, 837
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 168, 501
BssMI GATC 4 cut(s) 172, 176, 535, 842
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 3 cut(s) 169, 258, 447
Bst6I CTCTTC 3 cut(s) 224, 520, 641
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 64, 207
BstDEI CTNAG 3 cut(s) 201, 309, 960
BstKTI GATC 4 cut(s) 175, 179, 538, 845
BstMBI GATC 4 cut(s) 172, 176, 535, 842
BstMWI GCNNNNNNNGC 3 cut(s) 94, 569, 632
BstNI CCWGG 3 cut(s) 169, 258, 447
BstNSI RCATGY 1 cut(s) 720
BstSCI CCNGG 3 cut(s) 167, 256, 445
BstSFI CTRYAG 3 cut(s) 636, 810, 1020
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 97, 250, 824, 989
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 2 cut(s) 535, 842
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 2 cut(s) 535, 842
Bsu15I ATCGAT 1 cut(s) 175
BsuRI GGCC 1 cut(s) 397
BsuTUI ATCGAT 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 5 cut(s) 66, 308, 420, 457, 993
Cac8I GCNNGC 2 cut(s) 64, 207
ClaI ATCGAT 1 cut(s) 175
CviAII CATG 5 cut(s) 121, 334, 452, 682, 717
DdeI CTNAG 3 cut(s) 201, 309, 960
DpnI GATC 4 cut(s) 174, 178, 537, 844
DpnII GATC 4 cut(s) 172, 176, 535, 842
Eam1104I CTCTTC 3 cut(s) 224, 520, 641
EarI CTCTTC 3 cut(s) 224, 520, 641
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 397
Eco32I GATATC 1 cut(s) 488
Eco57I CTGAAG 2 cut(s) 476, 573
EcoRII CCWGG 3 cut(s) 167, 256, 445
EcoRV GATATC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 5 cut(s) 124, 337, 455, 685, 720
FaqI GGGAC 1 cut(s) 738
FatI CATG 5 cut(s) 120, 333, 451, 681, 716
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 13, 86, 264, 813, 978
Fsp4HI GCNGC 5 cut(s) 13, 86, 264, 813, 978
FspBI CTAG 3 cut(s) 152, 393, 761
GluI GCNGC 5 cut(s) 13, 86, 264, 813, 978
GsaI CCCAGC 1 cut(s) 630
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 397
Hin1II CATG 5 cut(s) 124, 337, 455, 685, 720
HinfI GANTC 2 cut(s) 528, 793
HphI GGTGA 2 cut(s) 246, 293
Hpy166II GTNNAC 2 cut(s) 254, 390
Hpy188I TCNGA 4 cut(s) 109, 495, 559, 887
Hpy188III TCNNGA 4 cut(s) 354, 539, 591, 780
Hpy8I GTNNAC 2 cut(s) 254, 390
HpyAV CCTTC 4 cut(s) 118, 319, 469, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 569, 632
HpyF3I CTNAG 3 cut(s) 201, 309, 960
Hsp92II CATG 5 cut(s) 124, 337, 455, 685, 720
Kzo9I GATC 4 cut(s) 172, 176, 535, 842
LmnI GCTCC 1 cut(s) 260
Lsp1109I GCAGC 4 cut(s) 97, 250, 824, 989
LweI GCATC 3 cut(s) 127, 550, 780
MaeI CTAG 3 cut(s) 152, 393, 761
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 174, 178, 537, 844
MboI GATC 4 cut(s) 172, 176, 535, 842
MboII GAAGA 7 cut(s) 241, 341, 482, 537, 658, 748, 802
MflI RGATCY 2 cut(s) 535, 842
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 6 cut(s) 19, 112, 162, 692, 739, 941
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 608
MnlI CCTC 2 cut(s) 685, 703
Mph1103I ATGCAT 1 cut(s) 246
MseI TTAA 2 cut(s) 482, 968
MslI CAYNNNNRTG 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 12
MspR9I CCNGG 3 cut(s) 169, 258, 447
Mva1269I GAATGC 1 cut(s) 1008
MvaI CCWGG 3 cut(s) 169, 258, 447
MwoI GCNNNNNNNGC 3 cut(s) 94, 569, 632
NdeI CATATG 1 cut(s) 145
NdeII GATC 4 cut(s) 172, 176, 535, 842
NlaIII CATG 5 cut(s) 124, 337, 455, 685, 720
NmuCI GTSAC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 246
NspI RCATGY 1 cut(s) 720
OliI CACNNNNGTG 1 cut(s) 385
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 716
PctI GAATGC 1 cut(s) 1008
PfeI GAWTC 1 cut(s) 793
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 5 cut(s) 14, 87, 265, 814, 979
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PscI ACATGT 1 cut(s) 716
Psp6I CCWGG 3 cut(s) 167, 256, 445
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 3 cut(s) 167, 256, 445
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 2 cut(s) 535, 842
RseI CAYNNNNRTG 1 cut(s) 385
SaqAI TTAA 2 cut(s) 482, 968
SatI GCNGC 5 cut(s) 13, 86, 264, 813, 978
Sau3AI GATC 4 cut(s) 172, 176, 535, 842
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 3 cut(s) 169, 258, 447
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 3 cut(s) 127, 550, 780
SfcI CTRYAG 3 cut(s) 636, 810, 1020
SmiMI CAYNNNNRTG 1 cut(s) 385
SpeI ACTAGT 1 cut(s) 760
Sse9I AATT 6 cut(s) 19, 112, 162, 692, 739, 941
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 12
SspMI CTAG 3 cut(s) 152, 393, 761
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 3 cut(s) 167, 256, 445
StyI CCWWGG 1 cut(s) 501
TaqI TCGA 2 cut(s) 175, 599
TasI AATT 6 cut(s) 19, 112, 162, 692, 739, 941
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 793
Tru1I TTAA 2 cut(s) 482, 968
Tru9I TTAA 2 cut(s) 482, 968
TscAI CASTG 5 cut(s) 73, 308, 420, 464, 1000
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 4 cut(s) 85, 263, 812, 977
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 6 cut(s) 17, 132, 137, 350, 468, 785
TspRI CASTG 5 cut(s) 73, 308, 420, 464, 1000
VneI GTGCAC 1 cut(s) 388
XapI RAATTY 4 cut(s) 19, 112, 692, 739
XceI RCATGY 1 cut(s) 720
XspI CTAG 3 cut(s) 152, 393, 761
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.