Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Forward (+)

6783936 .. 6785231

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCTTAGTGACACATTTTGACATGGAATTGCACCAAATGGATGTGAAGACTGCCTTCTTGAATGGAGACTTGGATGAGGAGATCTACATGAGACAACCAGAAGGTTTTATTGAGCCTGGAACTGAACACTTAGTCTGTACTAGACCTGATTTGGCTTTTGCAGTAAGTATGTTAGATAGGTTTCAATCCAATCCAGGACATGAACATTGGATAGCTGGGAAGAAAATCTTAAGGTACTTACAGAGAACTAAGACTGCAGTTTACTTTACCAAGAACAATAAAAGATCAACCAATTCCAAGCATATTGACTTGAAATATTATAATGTTAGAGAAAGGGTGAAGCATAAGGAGCTTGATATTGTGAAGATTAGTACCCAGAACCAGCTAGCTGATCCATTCACCAAACCCTTAACTGTTGCAGCTTTTCAAAATCATACTCGATGTATTGGCATTTTGCCTACTTTGGATACTGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS RVT_2

Protein Analysis

160

Amino Acids

18.54

Weight (kDa)

7.83

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 47	3.4e-10	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AclWI	GGATC	1 cut(s)	389
AfaI	GTAC	3 cut(s)	142, 239, 376
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	64, 188, 316, 431
AjnI	CCWGG	2 cut(s)	118, 196
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	6 cut(s)	218, 355, 388, 392, 425, 479
AluI	AGCT	6 cut(s)	218, 355, 388, 392, 425, 479
Alw26I	GTCTC	2 cut(s)	63, 88
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	352, 394
AsuNHI	GCTAGC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	120, 198
BciVI	GTATCC	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	63, 88
BfaI	CTAG	2 cut(s)	144, 389
BfmI	CTRYAG	1 cut(s)	258
BfrI	CTTAAG	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	463
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	120, 198
BmrFI	CCNGG	2 cut(s)	120, 198
BmtI	GCTAGC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	120, 198
BseGI	GGATG	2 cut(s)	49, 82
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	434
BseYI	CCCAGC	1 cut(s)	218
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	2 cut(s)	63, 88
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	84, 287, 394
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	262
BspOI	GCTAGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	389
BspTI	CTTAAG	1 cut(s)	232
BssMI	GATC	3 cut(s)	84, 287, 394
Bst2UI	CCWGG	2 cut(s)	120, 198
Bst4CI	ACNGT	1 cut(s)	418
BstAFI	CTTAAG	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	4 cut(s)	7, 133, 252, 480
BstF5I	GGATG	2 cut(s)	49, 82
BstKTI	GATC	3 cut(s)	87, 290, 397
BstMAI	GTCTC	2 cut(s)	63, 88
BstMBI	GATC	3 cut(s)	84, 287, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	120, 198
BstSCI	CCNGG	2 cut(s)	118, 196
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	49, 82
Cac8I	GCNNGC	1 cut(s)	390
Csp6I	GTAC	3 cut(s)	141, 238, 375
CviAII	CATG	3 cut(s)	25, 91, 203
CviJI	RGCY	9 cut(s)	5, 118, 158, 218, 355, 388, 392, 425, 479
CviKI_1	RGCY	9 cut(s)	5, 118, 158, 218, 355, 388, 392, 425, 479
CviQI	GTAC	3 cut(s)	141, 238, 375
DdeI	CTNAG	4 cut(s)	7, 133, 252, 480
DpnI	GATC	3 cut(s)	86, 289, 396
DpnII	GATC	3 cut(s)	84, 287, 394
EcoRII	CCWGG	2 cut(s)	118, 196
FaeI	CATG	3 cut(s)	28, 94, 206
FaiI	YATR	8 cut(s)	26, 92, 173, 204, 306, 324, 348, 438
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 215, 247
FatI	CATG	3 cut(s)	24, 90, 202
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	56, 89
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	144, 389
GluI	GCNGC	1 cut(s)	423
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	28, 94, 206
HindIII	AAGCTT	1 cut(s)	477
HphI	GGTGA	2 cut(s)	352, 394
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	2 cut(s)	67, 98
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	4 cut(s)	34, 164, 260, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	4 cut(s)	7, 133, 252, 480
Hsp92II	CATG	3 cut(s)	28, 94, 206
Kzo9I	GATC	3 cut(s)	84, 287, 394
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	9 cut(s)	105, 114, 132, 162, 183, 204, 210, 392, 398
Lsp1109I	GCAGC	1 cut(s)	434
MaeI	CTAG	2 cut(s)	144, 389
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	86, 289, 396
MboI	GATC	3 cut(s)	84, 287, 394
MboII	GAAGA	3 cut(s)	61, 235, 379
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	2 cut(s)	29, 295
MnlI	CCTC	1 cut(s)	73
MseI	TTAA	2 cut(s)	233, 413
MspCI	CTTAAG	1 cut(s)	232
MspR9I	CCNGG	2 cut(s)	120, 198
MvaI	CCWGG	2 cut(s)	120, 198
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	3 cut(s)	84, 287, 394
NheI	GCTAGC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	28, 94, 206
NmuCI	GTSAC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	424
PsiI	TTATAA	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	118, 196
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	118, 196
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	3 cut(s)	142, 239, 376
RsaNI	GTAC	3 cut(s)	141, 238, 375
SaqAI	TTAA	2 cut(s)	233, 413
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	84, 287, 394
ScrFI	CCNGG	2 cut(s)	120, 198
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	29, 295
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	2 cut(s)	144, 389
StyD4I	CCNGG	2 cut(s)	118, 196
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	1 cut(s)	442
TasI	AATT	2 cut(s)	29, 295
TatI	WGTACW	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	233, 413
Tru9I	TTAA	2 cut(s)	233, 413
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	219
Vha464I	CTTAAG	1 cut(s)	232
XspI	CTAG	2 cut(s)	144, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.