RchiOBHm_Chr2g0115341

beta-1,3-galactosyltransferase 3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
27449363 .. 27449851
489 bp
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UTR
Exon/CDS
Intron
PRQ48852

Sequence Viewer

Length: 441 bp
ATGGATGACTTGAAATCAACATCTGGATACATATTTCTTCTAGCAGGTAGAGCCATTTCATGGAAAACTGCAAAGCAGACTTTGACAGCAACATCAACTTTTCAAGCTGAATATATTGTCATTTATGAAGCAACAGGACATGCATTATGGTTGAGAAATTTTATTTCTCATTTGAAGCTAATAAGCTCTATAGAAAGGCCTATGGTGATTTACTGTGATAATGCATCAGCAGTGTTCTTTTCAAAGAACAACAAGAGGTCTTCAGGTTCAAGGAACATTGATGTCAAGTACTTTGCAGTGAGAAAAAGTGTTAGGGATGAAGAGATCGAGATTGTAAAGATTGGAACTAAAGATCAGTTAGCAGATCCATTGACAAAAGCTTTACCAGTAGCTGATTTTGTCAAGCATGCTGCACATATGGGAATTAAAGACATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

9.35

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 60
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 5 cut(s) 13, 104, 175, 243, 270
AluBI AGCT 5 cut(s) 107, 178, 186, 380, 392
AluI AGCT 5 cut(s) 107, 178, 186, 380, 392
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 397
BciVI GTATCC 1 cut(s) 20
BfaI CTAG 2 cut(s) 41, 439
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmcAI AGTACT 1 cut(s) 290
BmsI GCATC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 386
BseGI GGATG 2 cut(s) 10, 322
BseLI CCNNNNNNNGG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 324, 352, 364
BspANI GGCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 386
BssMI GATC 3 cut(s) 324, 352, 364
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 408
BstF5I GGATG 2 cut(s) 10, 322
BstKTI GATC 3 cut(s) 327, 355, 367
BstMBI GATC 3 cut(s) 324, 352, 364
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 143, 410
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 10, 322
BtsI GCAGTG 2 cut(s) 237, 303
BtsIMutI CAGTG 2 cut(s) 237, 303
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 392
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 60, 140, 407
CviJI RGCY 7 cut(s) 53, 107, 178, 186, 199, 380, 392
CviKI_1 RGCY 7 cut(s) 53, 107, 178, 186, 199, 380, 392
CviQI GTAC 1 cut(s) 289
DpnI GATC 3 cut(s) 326, 354, 366
DpnII GATC 3 cut(s) 324, 352, 364
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 246
EcoT22I ATGCAT 2 cut(s) 145, 226
FaeI CATG 3 cut(s) 63, 143, 410
FatI CATG 3 cut(s) 59, 139, 406
FauNDI CATATG 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 2 cut(s) 17, 329
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 2 cut(s) 41, 439
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 3 cut(s) 63, 143, 410
HindIII AAGCTT 1 cut(s) 378
HphI GGTGA 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 24, 328
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 71, 143, 224, 296, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 3 cut(s) 63, 143, 410
Kzo9I GATC 3 cut(s) 324, 352, 364
LpnPI CCDG 5 cut(s) 9, 30, 120, 249, 399
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 233
MaeI CTAG 2 cut(s) 41, 439
MalI GATC 3 cut(s) 326, 354, 366
MboI GATC 3 cut(s) 324, 352, 364
MboII GAAGA 3 cut(s) 29, 252, 332
MflI RGATCY 1 cut(s) 364
MluCI AATT 2 cut(s) 157, 423
MnlI CCTC 1 cut(s) 249
Mph1103I ATGCAT 2 cut(s) 145, 226
MseI TTAA 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeI CATATG 1 cut(s) 417
NdeII GATC 3 cut(s) 324, 352, 364
NlaIII CATG 3 cut(s) 63, 143, 410
NsiI ATGCAT 2 cut(s) 145, 226
NspI RCATGY 2 cut(s) 143, 410
PaeI GCATGC 1 cut(s) 410
PceI AGGCCT 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 3 cut(s) 324, 352, 364
ScaI AGTACT 1 cut(s) 290
SetI ASST 8 cut(s) 49, 109, 180, 188, 260, 268, 382, 394
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 189
SphI GCATGC 1 cut(s) 410
Sse9I AATT 2 cut(s) 157, 423
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 2 cut(s) 41, 439
StuI AGGCCT 1 cut(s) 199
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 327
TasI AATT 2 cut(s) 157, 423
TatI WGTACW 1 cut(s) 288
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 237, 303
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 48, 141, 333
TspRI CASTG 2 cut(s) 237, 303
Van91I CCANNNNNTGG 1 cut(s) 60
XapI RAATTY 1 cut(s) 157
XceI RCATGY 2 cut(s) 143, 410
XspI CTAG 2 cut(s) 41, 439
ZrmI AGTACT 1 cut(s) 290
Zsp2I ATGCAT 2 cut(s) 145, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.