Rw4G002540

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001006
Physical Location & Seq
Reverse (-)
5048217 .. 5049512
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002540.1

Sequence Viewer

Length: 567 bp
ATGGCACTTGTTGCACATTTTAATTTGGAGCTGCATCAAATGGATGTTAAGACAGCTTTTCTAAATGGAGATTTGAATGAGGAAATTTATATGGTTCAGCCAGAGGGTTTTGTGATGAAGGGTAATGAAAACAAAGTCTGCAAACTCAGAAAATCAATTTATGGGTTGAAACAAGCTTCTAGACAGTGGTATATTAAGTTTGATTCAGTCATTACTGGTTTTGGTTTTGTTGAGAATAAGCTTGATGAGTGCGTATACATGAAAATATGTGGGAGTAGGTTCATTTTTCTCATTGTGGATTCCATTCAGAGGCCTCTTAGATTGTACTGTGACAATGCTGCAGCTGTGTTTTTTGCCAAGAATAACAAAAGGTCCACTGCGTCAAGAAATATTAATGTTAAATATTTTGCAGTCAGGGAAAGTATTAAAGATGGTGAGATTGAGGTTATAAAGATAGGCACTACTTCTCAGCTGGCAGACCCATTAACAAAAGCTCTAGCTGTGTCACCTTTCCAGCAACATGTAAAGAACATGGGTATTTTAGAAGCTCTTGATCTTTTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

188

Amino Acids

21.37

Weight (kDa)

8.61

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 97 3.2e-28 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AccI GTMKAC 1 cut(s) 255
AcsI RAATTY 1 cut(s) 84
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 2 cut(s) 76, 169
AluBI AGCT 9 cut(s) 31, 56, 176, 241, 344, 472, 494, 500, 548
AluI AGCT 9 cut(s) 31, 56, 176, 241, 344, 472, 494, 500, 548
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 3 cut(s) 31, 338, 341
ApoI RAATTY 1 cut(s) 84
AseI ATTAAT 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 446, 498
AvaII GGWCC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 18, 325, 353
BccI CCATC 1 cut(s) 425
BfaI CTAG 2 cut(s) 180, 497
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 32, 339, 342
BlsI GCNGC 3 cut(s) 33, 340, 343
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 160, 482
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 3 cut(s) 18, 325, 353
BshFI GGCC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 309
BsnI GGCC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 553
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 2 cut(s) 159, 481
BspMAI CTGCAG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 220
BssMI GATC 1 cut(s) 553
BssNAI GTATAC 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 186, 329
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 3 cut(s) 146, 317, 468
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 556
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 18, 325, 353
BstZ17I GTATAC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 191, 375
Cac8I GCNNGC 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 372
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 259, 521, 532
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 146, 317, 468
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
Eco147I AGGCCT 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 372
FaeI CATG 3 cut(s) 262, 524, 535
FatI CATG 3 cut(s) 258, 520, 531
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 32, 339, 342
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 32, 339, 342
FspBI CTAG 2 cut(s) 180, 497
GluI GCNGC 3 cut(s) 32, 339, 342
HaeIII GGCC 1 cut(s) 313
HgaI GACGC 1 cut(s) 369
Hin1II CATG 3 cut(s) 262, 524, 535
HindIII AAGCTT 2 cut(s) 174, 239
HinfI GANTC 2 cut(s) 203, 299
HphI GGTGA 2 cut(s) 446, 498
Hpy166II GTNNAC 2 cut(s) 256, 375
Hpy188I TCNGA 2 cut(s) 149, 309
Hpy188III TCNNGA 3 cut(s) 180, 384, 551
Hpy8I GTNNAC 2 cut(s) 256, 375
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 186, 329
HpyCH4V TGCA 5 cut(s) 14, 34, 141, 341, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 146, 317, 468
Hsp92II CATG 3 cut(s) 262, 524, 535
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 114, 201, 400, 458, 527
Lsp1109I GCAGC 3 cut(s) 18, 325, 353
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 180, 497
MaeIII GTNAC 2 cut(s) 329, 504
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MluCI AATT 3 cut(s) 22, 84, 156
MnlI CCTC 5 cut(s) 73, 97, 303, 324, 436
MseI TTAA 7 cut(s) 21, 48, 195, 393, 399, 426, 485
MspA1I CMGCKG 2 cut(s) 344, 472
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 553
NlaIII CATG 3 cut(s) 262, 524, 535
NmuCI GTSAC 2 cut(s) 329, 504
NspI RCATGY 1 cut(s) 524
PceI AGGCCT 1 cut(s) 313
PciI ACATGT 1 cut(s) 520
PfeI GAWTC 2 cut(s) 203, 299
PkrI GCNGC 3 cut(s) 33, 340, 343
PscI ACATGT 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 393
PsiI TTATAA 1 cut(s) 449
PspPI GGNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 343
PvuII CAGCTG 2 cut(s) 344, 472
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 7 cut(s) 21, 48, 195, 393, 399, 426, 485
SatI GCNGC 3 cut(s) 32, 339, 342
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 372
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 372
Sse9I AATT 3 cut(s) 22, 84, 156
SseBI AGGCCT 1 cut(s) 313
SspI AATATT 2 cut(s) 391, 404
SspMI CTAG 2 cut(s) 180, 497
StuI AGGCCT 1 cut(s) 313
TaaI ACNGT 2 cut(s) 186, 329
TasI AATT 3 cut(s) 22, 84, 156
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 2 cut(s) 203, 299
Tru1I TTAA 7 cut(s) 21, 48, 195, 393, 399, 426, 485
Tru9I TTAA 7 cut(s) 21, 48, 195, 393, 399, 426, 485
TscAI CASTG 2 cut(s) 191, 382
TseFI GTSAC 2 cut(s) 329, 504
TseI GCWGC 3 cut(s) 31, 338, 341
Tsp45I GTSAC 2 cut(s) 329, 504
TspDTI ATGAA 4 cut(s) 131, 141, 271, 275
TspRI CASTG 2 cut(s) 191, 382
VpaK11BI GGWCC 1 cut(s) 372
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 84
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 180, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.