Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_2 | PF07727 | 46 - 291 | 4.1e-76 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 528 |
| AccB1I | GGYRCC | 1 cut(s) | 528 |
| AccBSI | CCGCTC | 1 cut(s) | 922 |
| AccI | GTMKAC | 2 cut(s) | 6, 1359 |
| AccII | CGCG | 2 cut(s) | 213, 520 |
| AciI | CCGC | 4 cut(s) | 922, 954, 1010, 1401 |
| AclWI | GGATC | 3 cut(s) | 41, 54, 1059 |
| AcsI | RAATTY | 7 cut(s) | 23, 82, 694, 710, 939, 1333, 1383 |
| AcuI | CTGAAG | 3 cut(s) | 186, 462, 620 |
| AcvI | CACGTG | 1 cut(s) | 779 |
| AfaI | GTAC | 2 cut(s) | 530, 988 |
| AflII | CTTAAG | 1 cut(s) | 893 |
| AgsI | TTSAA | 3 cut(s) | 202, 716, 758 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 34 |
| AjnI | CCWGG | 1 cut(s) | 1042 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 15, 47, 1039, 1071 |
| AluBI | AGCT | 5 cut(s) | 353, 395, 1064, 1220, 1283 |
| AluI | AGCT | 5 cut(s) | 353, 395, 1064, 1220, 1283 |
| Alw26I | GTCTC | 2 cut(s) | 559, 801 |
| AlwI | GGATC | 3 cut(s) | 41, 54, 1059 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1160 |
| AoxI | GGCC | 2 cut(s) | 1305, 1373 |
| ApoI | RAATTY | 7 cut(s) | 23, 82, 694, 710, 939, 1333, 1383 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 989, 1021 |
| AseI | ATTAAT | 1 cut(s) | 1455 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 762, 939 |
| Asp718I | GGTACC | 1 cut(s) | 528 |
| AspS9I | GGNCC | 2 cut(s) | 130, 1562 |
| AsuHPI | GGTGA | 3 cut(s) | 743, 843, 1087 |
| AvaII | GGWCC | 2 cut(s) | 130, 1562 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 512, 537, 545, 570 |
| BamHI | GGATCC | 1 cut(s) | 46 |
| BanI | GGYRCC | 1 cut(s) | 528 |
| BbrPI | CACGTG | 1 cut(s) | 779 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1349, 1383 |
| BciT130I | CCWGG | 1 cut(s) | 1044 |
| BclI | TGATCA | 1 cut(s) | 1579 |
| BcoDI | GTCTC | 2 cut(s) | 559, 801 |
| BfaI | CTAG | 6 cut(s) | 660, 824, 1178, 1217, 1371, 1460 |
| BfmI | CTRYAG | 1 cut(s) | 957 |
| BfrI | CTTAAG | 1 cut(s) | 893 |
| BglII | AGATCT | 1 cut(s) | 1124 |
| Bme1390I | CCNGG | 1 cut(s) | 1044 |
| Bme18I | GGWCC | 2 cut(s) | 130, 1562 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 2 cut(s) | 130, 1562 |
| BmiI | GGNNCC | 2 cut(s) | 48, 530 |
| BmrFI | CCNGG | 1 cut(s) | 1044 |
| BmsI | GCATC | 3 cut(s) | 91, 746, 959 |
| BpmI | CTGGAG | 1 cut(s) | 1242 |
| BpuEI | CTTGAG | 3 cut(s) | 518, 1157, 1422 |
| Bsa29I | ATCGAT | 2 cut(s) | 494, 586 |
| BsaAI | YACGTR | 2 cut(s) | 745, 779 |
| BsaWI | WCCGGW | 1 cut(s) | 49 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 289, 319, 1215, 1245 |
| Bse1I | ACTGG | 1 cut(s) | 1189 |
| Bse3DI | GCAATG | 2 cut(s) | 858, 905 |
| BseBI | CCWGG | 1 cut(s) | 1044 |
| BseCI | ATCGAT | 2 cut(s) | 494, 586 |
| BseGI | GGATG | 5 cut(s) | 176, 388, 737, 950, 1489 |
| BseMI | GCAATG | 2 cut(s) | 858, 905 |
| BseMII | CTCAG | 6 cut(s) | 284, 343, 812, 1275, 1356, 1370 |
| BseNI | ACTGG | 1 cut(s) | 1189 |
| BseRI | GAGGAG | 1 cut(s) | 431 |
| Bsh1236I | CGCG | 2 cut(s) | 213, 520 |
| BshFI | GGCC | 2 cut(s) | 1307, 1375 |
| BshNI | GGYRCC | 1 cut(s) | 528 |
| BshVI | ATCGAT | 2 cut(s) | 494, 586 |
| BsiSI | CCGG | 1 cut(s) | 50 |
| BslFI | GGGAC | 1 cut(s) | 893 |
| BsmAI | GTCTC | 2 cut(s) | 559, 801 |
| BsmFI | GGGAC | 1 cut(s) | 893 |
| BsmI | GAATGC | 1 cut(s) | 1571 |
| BsnI | GGCC | 2 cut(s) | 1307, 1375 |
| Bsp1407I | TGTACA | 1 cut(s) | 986 |
| Bsp143I | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| Bsp68I | TCGCGA | 1 cut(s) | 520 |
| BspACI | CCGC | 4 cut(s) | 922, 954, 1010, 1401 |
| BspANI | GGCC | 2 cut(s) | 1307, 1375 |
| BspCNI | CTCAG | 6 cut(s) | 283, 342, 811, 1276, 1355, 1371 |
| BspDI | ATCGAT | 2 cut(s) | 494, 586 |
| BspFNI | CGCG | 2 cut(s) | 213, 520 |
| BspHI | TCATGA | 1 cut(s) | 1530 |
| BspLI | GGNNCC | 2 cut(s) | 48, 530 |
| BspPI | GGATC | 3 cut(s) | 41, 54, 1059 |
| BspT107I | GGYRCC | 1 cut(s) | 528 |
| BspTI | CTTAAG | 1 cut(s) | 893 |
| BsrBI | CCGCTC | 1 cut(s) | 922 |
| BsrDI | GCAATG | 2 cut(s) | 858, 905 |
| BsrGI | TGTACA | 1 cut(s) | 986 |
| BsrI | ACTGG | 1 cut(s) | 1189 |
| BssMI | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| BssNAI | GTATAC | 1 cut(s) | 7 |
| Bst1107I | GTATAC | 1 cut(s) | 7 |
| Bst2UI | CCWGG | 1 cut(s) | 1044 |
| Bst4CI | ACNGT | 3 cut(s) | 550, 786, 1364 |
| BstAFI | CTTAAG | 1 cut(s) | 893 |
| BstAUI | TGTACA | 1 cut(s) | 986 |
| BstBAI | YACGTR | 2 cut(s) | 745, 779 |
| BstC8I | GCNNGC | 2 cut(s) | 657, 1281 |
| BstF5I | GGATG | 5 cut(s) | 176, 388, 737, 950, 1489 |
| BstFNI | CGCG | 2 cut(s) | 213, 520 |
| BstKTI | GATC | 8 cut(s) | 49, 586, 670, 776, 1054, 1127, 1165, 1582 |
| BstMAI | GTCTC | 2 cut(s) | 559, 801 |
| BstMBI | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 350, 1226 |
| BstNI | CCWGG | 1 cut(s) | 1044 |
| BstSCI | CCNGG | 1 cut(s) | 1042 |
| BstSFI | CTRYAG | 1 cut(s) | 957 |
| BstUI | CGCG | 2 cut(s) | 213, 520 |
| BstX2I | RGATCY | 2 cut(s) | 46, 1124 |
| BstYI | RGATCY | 2 cut(s) | 46, 1124 |
| BstZ17I | GTATAC | 1 cut(s) | 7 |
| Bsu15I | ATCGAT | 2 cut(s) | 494, 586 |
| BsuRI | GGCC | 2 cut(s) | 1307, 1375 |
| BsuTUI | ATCGAT | 2 cut(s) | 494, 586 |
| BtsCI | GGATG | 5 cut(s) | 176, 388, 737, 950, 1489 |
| BtsIMutI | CAGTG | 3 cut(s) | 80, 613, 1376 |
| BtuMI | TCGCGA | 1 cut(s) | 520 |
| Cac8I | GCNNGC | 2 cut(s) | 657, 1281 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1160 |
| CciI | TCATGA | 1 cut(s) | 1530 |
| Cfr13I | GGNCC | 2 cut(s) | 130, 1562 |
| ClaI | ATCGAT | 2 cut(s) | 494, 586 |
| Csp6I | GTAC | 2 cut(s) | 529, 987 |
| CviQI | GTAC | 2 cut(s) | 529, 987 |
| DpnI | GATC | 8 cut(s) | 48, 585, 669, 775, 1053, 1126, 1164, 1581 |
| DpnII | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| DriI | GACNNNNNGTC | 1 cut(s) | 34 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 34 |
| Eco47I | GGWCC | 2 cut(s) | 130, 1562 |
| Eco57I | CTGAAG | 3 cut(s) | 186, 462, 620 |
| Eco72I | CACGTG | 1 cut(s) | 779 |
| EcoRI | GAATTC | 3 cut(s) | 82, 939, 1383 |
| EcoRII | CCWGG | 1 cut(s) | 1042 |
| EcoT22I | ATGCAT | 2 cut(s) | 952, 1321 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 234, 266, 928, 960 |
| FaqI | GGGAC | 1 cut(s) | 893 |
| FbaI | TGATCA | 1 cut(s) | 1579 |
| FblI | GTMKAC | 2 cut(s) | 6, 1359 |
| FokI | GGATG | 5 cut(s) | 183, 395, 724, 937, 1496 |
| FspBI | CTAG | 6 cut(s) | 660, 824, 1178, 1217, 1371, 1460 |
| GsuI | CTGGAG | 1 cut(s) | 1242 |
| HaeIII | GGCC | 2 cut(s) | 1307, 1375 |
| HapII | CCGG | 1 cut(s) | 50 |
| HincII | GTYRAC | 2 cut(s) | 1360, 1513 |
| HindII | GTYRAC | 2 cut(s) | 1360, 1513 |
| HinfI | GANTC | 5 cut(s) | 17, 215, 323, 433, 1157 |
| HpaI | GTTAAC | 1 cut(s) | 1513 |
| HpaII | CCGG | 1 cut(s) | 50 |
| HphI | GGTGA | 3 cut(s) | 743, 843, 1087 |
| Hpy166II | GTNNAC | 5 cut(s) | 7, 782, 851, 1360, 1513 |
| Hpy188III | TCNNGA | 6 cut(s) | 519, 767, 824, 1178, 1460, 1531 |
| Hpy8I | GTNNAC | 5 cut(s) | 7, 782, 851, 1360, 1513 |
| HpyCH4III | ACNGT | 3 cut(s) | 550, 786, 1364 |
| HpyCH4IV | ACGT | 2 cut(s) | 744, 778 |
| HpyCH4V | TGCA | 7 cut(s) | 13, 950, 977, 1247, 1279, 1319, 1538 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 350, 1226 |
| HpySE526I | ACGT | 2 cut(s) | 744, 778 |
| KpnI | GGTACC | 1 cut(s) | 532 |
| Ksp22I | TGATCA | 1 cut(s) | 1579 |
| KspAI | GTTAAC | 1 cut(s) | 1513 |
| Kzo9I | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| LmnI | GCTCC | 2 cut(s) | 868, 919 |
| LweI | GCATC | 3 cut(s) | 91, 746, 959 |
| MaeI | CTAG | 6 cut(s) | 660, 824, 1178, 1217, 1371, 1460 |
| MaeII | ACGT | 2 cut(s) | 744, 778 |
| MaeIII | GTNAC | 4 cut(s) | 369, 678, 1202, 1391 |
| MalI | GATC | 8 cut(s) | 48, 585, 669, 775, 1053, 1126, 1164, 1581 |
| MbiI | CCGCTC | 1 cut(s) | 922 |
| MboI | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| MboII | GAAGA | 2 cut(s) | 1038, 1405 |
| MflI | RGATCY | 2 cut(s) | 46, 1124 |
| MlyI | GAGTC | 3 cut(s) | 209, 317, 1151 |
| MmeI | TCCRAC | 1 cut(s) | 994 |
| MnlI | CCTC | 9 cut(s) | 409, 412, 542, 727, 1074, 1132, 1217, 1297, 1474 |
| Mph1103I | ATGCAT | 2 cut(s) | 952, 1321 |
| MroXI | GAANNNNTTC | 2 cut(s) | 762, 939 |
| MseI | TTAA | 7 cut(s) | 485, 507, 540, 567, 894, 1455, 1512 |
| MspA1I | CMGCKG | 1 cut(s) | 956 |
| MspCI | CTTAAG | 1 cut(s) | 893 |
| MspI | CCGG | 1 cut(s) | 50 |
| MspR9I | CCNGG | 1 cut(s) | 1044 |
| Mva1269I | GAATGC | 1 cut(s) | 1571 |
| MvaI | CCWGG | 1 cut(s) | 1044 |
| MvnI | CGCG | 2 cut(s) | 213, 520 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 350, 1226 |
| NdeII | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| NlaIV | GGNNCC | 2 cut(s) | 48, 530 |
| NmuCI | GTSAC | 1 cut(s) | 1391 |
| NruI | TCGCGA | 1 cut(s) | 520 |
| NsiI | ATGCAT | 2 cut(s) | 952, 1321 |
| PagI | TCATGA | 1 cut(s) | 1530 |
| PctI | GAATGC | 1 cut(s) | 1571 |
| PdmI | GAANNNNTTC | 2 cut(s) | 762, 939 |
| PfeI | GAWTC | 2 cut(s) | 17, 433 |
| PfoI | TCCNGGA | 1 cut(s) | 1042 |
| PleI | GAGTC | 3 cut(s) | 209, 317, 1151 |
| PmaCI | CACGTG | 1 cut(s) | 779 |
| PmlI | CACGTG | 1 cut(s) | 779 |
| PpsI | GAGTC | 3 cut(s) | 209, 317, 1151 |
| Ppu21I | YACGTR | 2 cut(s) | 745, 779 |
| PshBI | ATTAAT | 1 cut(s) | 1455 |
| Psp6I | CCWGG | 1 cut(s) | 1042 |
| PspCI | CACGTG | 1 cut(s) | 779 |
| PspGI | CCWGG | 1 cut(s) | 1042 |
| PspN4I | GGNNCC | 2 cut(s) | 48, 530 |
| PspPI | GGNCC | 2 cut(s) | 130, 1562 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1160 |
| PsuI | RGATCY | 2 cut(s) | 46, 1124 |
| RruI | TCGCGA | 1 cut(s) | 520 |
| RsaI | GTAC | 2 cut(s) | 530, 988 |
| RsaNI | GTAC | 2 cut(s) | 529, 987 |
| SalI | GTCGAC | 1 cut(s) | 1358 |
| SaqAI | TTAA | 7 cut(s) | 485, 507, 540, 567, 894, 1455, 1512 |
| Sau3AI | GATC | 8 cut(s) | 46, 583, 667, 773, 1051, 1124, 1162, 1579 |
| Sau96I | GGNCC | 2 cut(s) | 130, 1562 |
| SchI | GAGTC | 3 cut(s) | 209, 317, 1151 |
| ScrFI | CCNGG | 1 cut(s) | 1044 |
| SfaNI | GCATC | 3 cut(s) | 91, 746, 959 |
| SfcI | CTRYAG | 1 cut(s) | 957 |
| SinI | GGWCC | 2 cut(s) | 130, 1562 |
| SmlI | CTYRAG | 4 cut(s) | 533, 893, 1136, 1437 |
| SmoI | CTYRAG | 4 cut(s) | 533, 893, 1136, 1437 |
| SsiI | CCGC | 4 cut(s) | 922, 954, 1010, 1401 |
| SspI | AATATT | 1 cut(s) | 762 |
| SspMI | CTAG | 6 cut(s) | 660, 824, 1178, 1217, 1371, 1460 |
| StyD4I | CCNGG | 1 cut(s) | 1042 |
| TaaI | ACNGT | 3 cut(s) | 550, 786, 1364 |
| TaiI | ACGT | 2 cut(s) | 747, 781 |
| TaqI | TCGA | 4 cut(s) | 494, 586, 766, 1359 |
| TatI | WGTACW | 1 cut(s) | 986 |
| TfiI | GAWTC | 2 cut(s) | 17, 433 |
| Tru1I | TTAA | 7 cut(s) | 485, 507, 540, 567, 894, 1455, 1512 |
| Tru9I | TTAA | 7 cut(s) | 485, 507, 540, 567, 894, 1455, 1512 |
| TscAI | CASTG | 3 cut(s) | 80, 613, 1383 |
| TseFI | GTSAC | 1 cut(s) | 1391 |
| Tsp45I | GTSAC | 1 cut(s) | 1391 |
| TspRI | CASTG | 3 cut(s) | 80, 613, 1383 |
| Vha464I | CTTAAG | 1 cut(s) | 893 |
| VpaK11BI | GGWCC | 2 cut(s) | 130, 1562 |
| VspI | ATTAAT | 1 cut(s) | 1455 |
| XapI | RAATTY | 7 cut(s) | 23, 82, 694, 710, 939, 1333, 1383 |
| XbaI | TCTAGA | 3 cut(s) | 823, 1177, 1459 |
| XmiI | GTMKAC | 2 cut(s) | 6, 1359 |
| XmnI | GAANNNNTTC | 2 cut(s) | 762, 939 |
| XspI | CTAG | 6 cut(s) | 660, 824, 1178, 1217, 1371, 1460 |
| Zsp2I | ATGCAT | 2 cut(s) | 952, 1321 |