RchiOBHm_Chr4g0390931

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001006
Physical Location & Seq
Reverse (-)
6212795 .. 6213589
795 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36385

Sequence Viewer

Length: 612 bp
ATGGAAAATTGTGCTGGTGGAGATTTACCTATGAGCAAAGGTGACAAATTCAATAAGTCACAGTGTCCGAAGAATGATTTTGAGAAGAATGCCATGAAGAACAAGCCGTACGCTTCACTCGTAGGAAGTTTGATGTATGCCCAGGTTTGTACTCGCCCGGATATAGCTTTTGCTGTTAGTATGCTTGGTAGGTATCAAGTTAATCCAGGAGAGATTCATTGGACAGCGGGGAAGAAAGTTTTGAGATACCTGAAGAAAACTAGAGACTACAAGCTAGTGTACAGGAAAGGTGAATCATTAGATGTGGTTGGGTATTCTGACTCAGATCATGCAGGTGATAAGGATGACTTGAAGTCTACTTCTGGTTTTGTTTTCCTCATGGCTGGTGGAGCAATATCATGGAGTAGTTCAAAGCAAACTGAGGCTACCTTATCTACCATGCAATCTGAATTTATTGCATTGAGTCATGCCACTACTCATGCAGTTTGGTTAAGAGATCTTATTCGCTGCACTCAGGTTGTTCCAACCATAGAAAGACCGATGCCTATCTATTGCGACAATTCTGCTGCAGTTTTCTTTGCAAAGAATAACAAGAGGTCTTCTAGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

9.13

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 323
Acc36I ACCTGC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 356
AciI CCGC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 47, 449
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 3 cut(s) 110, 151, 281
AgsI TTSAA 3 cut(s) 52, 352, 411
AhdI GACNNNNNGTC 1 cut(s) 352
AjnI CCWGG 2 cut(s) 141, 205
AluBI AGCT 3 cut(s) 167, 274, 606
AluI AGCT 3 cut(s) 167, 274, 606
Alw26I GTCTC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 507, 566
ApoI RAATTY 2 cut(s) 47, 449
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 53, 302, 347
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 2 cut(s) 494, 553
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 2 cut(s) 143, 207
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 3 cut(s) 261, 275, 603
BfmI CTRYAG 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 323
BglII AGATCT 1 cut(s) 496
BisI GCNGC 2 cut(s) 508, 567
BlsI GCNGC 2 cut(s) 509, 568
Bme1390I CCNGG 3 cut(s) 143, 158, 207
BmeRI GACNNNNNGTC 1 cut(s) 352
BmrFI CCNGG 3 cut(s) 143, 158, 207
BmsI GCATC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 591
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 545
BseBI CCWGG 2 cut(s) 143, 207
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 545
BseMII CTCAG 3 cut(s) 336, 411, 527
BseXI GCAGC 2 cut(s) 494, 553
BsgI GTGCAG 1 cut(s) 493
BsiSI CCGG 1 cut(s) 158
BsiWI CGTACG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 2 cut(s) 325, 496
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 3 cut(s) 335, 412, 526
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 325, 496
Bst2UI CCWGG 2 cut(s) 143, 207
Bst4CI ACNGT 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 322, 420, 513
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 328, 499
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 325, 496
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 2 cut(s) 143, 207
BstSCI CCNGG 3 cut(s) 141, 156, 205
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 494, 553
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 68
BveI ACCTGC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 109, 150, 280
CviAII CATG 7 cut(s) 94, 329, 379, 399, 439, 467, 479
CviJI RGCY 6 cut(s) 106, 167, 274, 383, 425, 606
CviKI_1 RGCY 6 cut(s) 106, 167, 274, 383, 425, 606
CviQI GTAC 3 cut(s) 109, 150, 280
DdeI CTNAG 3 cut(s) 322, 420, 513
DpnI GATC 2 cut(s) 327, 498
DpnII GATC 2 cut(s) 325, 496
DriI GACNNNNNGTC 1 cut(s) 352
Eam1105I GACNNNNNGTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 141, 205
FaeI CATG 7 cut(s) 97, 332, 382, 402, 442, 470, 482
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 7 cut(s) 93, 328, 378, 398, 438, 466, 478
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 508, 567
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 508, 567
FspBI CTAG 3 cut(s) 261, 275, 603
GluI GCNGC 2 cut(s) 508, 567
HapII CCGG 1 cut(s) 158
Hin1II CATG 7 cut(s) 97, 332, 382, 402, 442, 470, 482
HinfI GANTC 4 cut(s) 214, 293, 320, 463
HpaII CCGG 1 cut(s) 158
HphI GGTGA 3 cut(s) 53, 302, 347
Hpy166II GTNNAC 2 cut(s) 280, 357
Hpy188I TCNGA 4 cut(s) 69, 319, 325, 448
Hpy8I GTNNAC 2 cut(s) 280, 357
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 7 cut(s) 332, 442, 458, 482, 510, 569, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 3 cut(s) 322, 420, 513
Hsp92II CATG 7 cut(s) 97, 332, 382, 402, 442, 470, 482
Kzo9I GATC 2 cut(s) 325, 496
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 2 cut(s) 494, 553
LweI GCATC 1 cut(s) 531
MaeI CTAG 3 cut(s) 261, 275, 603
MaeIII GTNAC 2 cut(s) 41, 57
MalI GATC 2 cut(s) 327, 498
MboI GATC 2 cut(s) 325, 496
MboII GAAGA 6 cut(s) 82, 97, 109, 244, 265, 591
MflI RGATCY 1 cut(s) 496
MluCI AATT 4 cut(s) 7, 47, 449, 559
MlyI GAGTC 2 cut(s) 314, 472
MmeI TCCRAC 1 cut(s) 548
MnlI CCTC 3 cut(s) 386, 415, 588
MseI TTAA 2 cut(s) 201, 491
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 3 cut(s) 143, 158, 207
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 2 cut(s) 143, 207
MwoI GCNNNNNNNGC 1 cut(s) 389
NciI CCSGG 1 cut(s) 158
NdeII GATC 2 cut(s) 325, 496
NlaIII CATG 7 cut(s) 97, 332, 382, 402, 442, 470, 482
NmuCI GTSAC 2 cut(s) 41, 57
PaqCI CACCTGC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 214, 293
Pfl23II CGTACG 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 509, 568
PleI GAGTC 2 cut(s) 314, 471
PpsI GAGTC 2 cut(s) 314, 471
Psp6I CCWGG 2 cut(s) 141, 205
PspGI CCWGG 2 cut(s) 141, 205
PspLI CGTACG 1 cut(s) 108
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 3 cut(s) 110, 151, 281
RsaNI GTAC 3 cut(s) 109, 150, 280
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 201, 491
SatI GCNGC 2 cut(s) 508, 567
Sau3AI GATC 2 cut(s) 325, 496
SchI GAGTC 2 cut(s) 314, 472
ScrFI CCNGG 3 cut(s) 143, 158, 207
SfaNI GCATC 1 cut(s) 531
SfcI CTRYAG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 4 cut(s) 7, 47, 449, 559
SsiI CCGC 1 cut(s) 227
SspMI CTAG 3 cut(s) 261, 275, 603
StyD4I CCNGG 3 cut(s) 141, 156, 205
TaaI ACNGT 1 cut(s) 63
TaqII GACCGA 1 cut(s) 553
TasI AATT 4 cut(s) 7, 47, 449, 559
TatI WGTACW 2 cut(s) 149, 279
TfiI GAWTC 2 cut(s) 214, 293
Tru1I TTAA 2 cut(s) 201, 491
Tru9I TTAA 2 cut(s) 201, 491
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 2 cut(s) 41, 57
TseI GCWGC 2 cut(s) 507, 566
Tsp45I GTSAC 2 cut(s) 41, 57
TspDTI ATGAA 2 cut(s) 110, 206
TspRI CASTG 1 cut(s) 68
XapI RAATTY 2 cut(s) 47, 449
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 3 cut(s) 261, 275, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.