gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 3 - 56 | 1.4e-09 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 166, 343 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AgsI | TTSAA | 4 cut(s) | 95, 209, 286, 341 |
| AjnI | CCWGG | 1 cut(s) | 135 |
| AluBI | AGCT | 2 cut(s) | 50, 242 |
| AluI | AGCT | 2 cut(s) | 50, 242 |
| ApoI | RAATTY | 2 cut(s) | 166, 343 |
| BciT130I | CCWGG | 1 cut(s) | 137 |
| BfmI | CTRYAG | 1 cut(s) | 42 |
| Bme1390I | CCNGG | 1 cut(s) | 137 |
| BmiI | GGNNCC | 1 cut(s) | 134 |
| BmrFI | CCNGG | 1 cut(s) | 137 |
| BmsI | GCATC | 2 cut(s) | 155, 318 |
| Bse3DI | GCAATG | 1 cut(s) | 307 |
| BseBI | CCWGG | 1 cut(s) | 137 |
| BseGI | GGATG | 1 cut(s) | 333 |
| BseMI | GCAATG | 1 cut(s) | 307 |
| BseMII | CTCAG | 1 cut(s) | 240 |
| BslFI | GGGAC | 1 cut(s) | 43 |
| BsmFI | GGGAC | 1 cut(s) | 43 |
| BspCNI | CTCAG | 1 cut(s) | 239 |
| BspLI | GGNNCC | 1 cut(s) | 134 |
| BsrDI | GCAATG | 1 cut(s) | 307 |
| Bst2UI | CCWGG | 1 cut(s) | 137 |
| BstDEI | CTNAG | 3 cut(s) | 33, 98, 226 |
| BstF5I | GGATG | 1 cut(s) | 333 |
| BstNI | CCWGG | 1 cut(s) | 137 |
| BstSCI | CCNGG | 1 cut(s) | 135 |
| BstSFI | CTRYAG | 1 cut(s) | 42 |
| BtsCI | GGATG | 1 cut(s) | 333 |
| CsiI | ACCWGGT | 1 cut(s) | 135 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CviAII | CATG | 2 cut(s) | 253, 332 |
| CviJI | RGCY | 2 cut(s) | 50, 242 |
| CviKI_1 | RGCY | 2 cut(s) | 50, 242 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 3 cut(s) | 33, 98, 226 |
| DraI | TTTAAA | 1 cut(s) | 309 |
| EcoRII | CCWGG | 1 cut(s) | 135 |
| EcoT22I | ATGCAT | 1 cut(s) | 333 |
| FaeI | CATG | 2 cut(s) | 256, 335 |
| FaiI | YATR | 6 cut(s) | 9, 89, 197, 254, 296, 333 |
| FaqI | GGGAC | 1 cut(s) | 43 |
| FatI | CATG | 2 cut(s) | 252, 331 |
| FokI | GGATG | 1 cut(s) | 340 |
| Hin1II | CATG | 2 cut(s) | 256, 335 |
| HinfI | GANTC | 2 cut(s) | 4, 224 |
| Hpy188III | TCNNGA | 1 cut(s) | 283 |
| HpyAV | CCTTC | 1 cut(s) | 20 |
| HpyCH4V | TGCA | 3 cut(s) | 146, 300, 331 |
| HpyF3I | CTNAG | 3 cut(s) | 33, 98, 226 |
| Hsp92II | CATG | 2 cut(s) | 256, 335 |
| LpnPI | CCDG | 3 cut(s) | 66, 122, 149 |
| LweI | GCATC | 2 cut(s) | 155, 318 |
| MabI | ACCWGGT | 1 cut(s) | 135 |
| MboII | GAAGA | 1 cut(s) | 69 |
| MfeI | CAATTG | 1 cut(s) | 268 |
| MluCI | AATT | 5 cut(s) | 71, 166, 217, 268, 343 |
| MlyI | GAGTC | 1 cut(s) | 218 |
| MnlI | CCTC | 1 cut(s) | 184 |
| Mph1103I | ATGCAT | 1 cut(s) | 333 |
| MseI | TTAA | 1 cut(s) | 308 |
| MslI | CAYNNNNRTG | 1 cut(s) | 326 |
| MspR9I | CCNGG | 1 cut(s) | 137 |
| MunI | CAATTG | 1 cut(s) | 268 |
| MvaI | CCWGG | 1 cut(s) | 137 |
| NlaIII | CATG | 2 cut(s) | 256, 335 |
| NlaIV | GGNNCC | 1 cut(s) | 134 |
| NsiI | ATGCAT | 1 cut(s) | 333 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PleI | GAGTC | 1 cut(s) | 218 |
| PpsI | GAGTC | 1 cut(s) | 218 |
| Psp6I | CCWGG | 1 cut(s) | 135 |
| PspGI | CCWGG | 1 cut(s) | 135 |
| PspN4I | GGNNCC | 1 cut(s) | 134 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 326 |
| SaqAI | TTAA | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 218 |
| ScrFI | CCNGG | 1 cut(s) | 137 |
| SetI | ASST | 4 cut(s) | 39, 52, 138, 244 |
| SexAI | ACCWGGT | 1 cut(s) | 135 |
| SfaNI | GCATC | 2 cut(s) | 155, 318 |
| SfcI | CTRYAG | 1 cut(s) | 42 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 326 |
| Sse9I | AATT | 5 cut(s) | 71, 166, 217, 268, 343 |
| StyD4I | CCNGG | 1 cut(s) | 135 |
| TasI | AATT | 5 cut(s) | 71, 166, 217, 268, 343 |
| TatI | WGTACW | 1 cut(s) | 106 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 308 |
| Tru9I | TTAA | 1 cut(s) | 308 |
| TspDTI | ATGAA | 2 cut(s) | 17, 269 |
| XapI | RAATTY | 2 cut(s) | 166, 343 |
| Zsp2I | ATGCAT | 1 cut(s) | 333 |