RchiOBHm_Chr1g0317711

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001006
Physical Location & Seq
Reverse (-)
5278423 .. 5279137
715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54800

Sequence Viewer

Length: 699 bp
ATGGAGTCAAAGCCTTATGCCAGACTTGTAGGAAGTCTCATGTATGCGCAAGTCTGCACTAGGCCAGACTTGTCTTTTGCAGTAGGGATTTTGTCAAGATTCCAATCTAATCCAGGCCATGAACATTGGGTAGCTGGGAAGAAAGTGTTGAGATACCTGCAGAGAACTAAAAGCCATATGCTAGTTTATAGGCAAGTGGAGGATCTGAAACTCATAGGATTCTCAGACTCGGATTTTGCAGGGAATTATCCAGACTCCAAGAAGTCGACTTGTGGATATGTGTTCATGCTTGCAGGAGGTGCTATTGCTTGGAAAACCATGAAACAAACACTTGTTTCAACTTCTACTATGCAAGCTGAATTTATTGCAGTATATGAAACTGTGTGTGAAGGACTTTGGATTAGGAATTTTCTCATGCAGACCAAAGTATTGAGTCACATTGTGGCTGGAACACTTGCGATTTATTGTGACAATGAGGCTGCAGTTTTCTTTAGCAAGAACAGTAAAAGGTCAAATAATTCCAAGCATATTGATCTAAAGTATTACAGTGTTAGAGAAAGAGTAAAGCATGGTGAAATAGCTGTTTTGAGTATTGACACAAATTCACAGCTAGCAGATCCTTTCACCAAGGCATTGTCAGTAGCAGCATTCCAGAAACATACAGCAAGCATTGGAATTTTAGCTAATTTAGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

232

Amino Acids

25.89

Weight (kDa)

9.28

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
Acc36I ACCTGC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 266
AclWI GGATC 2 cut(s) 210, 611
AcsI RAATTY 4 cut(s) 359, 406, 601, 675
AdeI CACNNNGTG 1 cut(s) 442
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 5 cut(s) 134, 356, 581, 610, 683
AluI AGCT 5 cut(s) 134, 356, 581, 610, 683
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 210, 611
AoxI GGCC 2 cut(s) 62, 115
ApeKI GCWGC 2 cut(s) 479, 644
ApoI RAATTY 4 cut(s) 359, 406, 601, 675
ArsI GACNNNNNNTTYG 4 cut(s) 59, 91, 218, 250
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 584, 616
AsuNHI GCTAGC 1 cut(s) 610
BbvI GCAGC 2 cut(s) 466, 656
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 3 cut(s) 60, 182, 611
BfmI CTRYAG 2 cut(s) 158, 480
BfuAI ACCTGC 1 cut(s) 165
BisI GCNGC 2 cut(s) 480, 645
BlsI GCNGC 2 cut(s) 481, 646
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 682
BmtI GCTAGC 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 627
BseJI GATNNNNATC 1 cut(s) 103
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 466, 656
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 2 cut(s) 64, 117
BsmAI GTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 2 cut(s) 64, 117
Bsp143I GATC 3 cut(s) 202, 532, 616
BspANI GGCC 2 cut(s) 64, 117
BspCNI CTCAG 1 cut(s) 236
BspMAI CTGCAG 2 cut(s) 162, 484
BspMI ACCTGC 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 614
BspPI GGATC 2 cut(s) 210, 611
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 3 cut(s) 202, 532, 616
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 382, 503, 548
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 4 cut(s) 291, 354, 612, 667
BstDEI CTNAG 2 cut(s) 223, 696
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 3 cut(s) 205, 535, 619
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 202, 532, 616
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 158, 480
BstV1I GCAGC 2 cut(s) 466, 656
BstX2I RGATCY 2 cut(s) 202, 616
BstYI RGATCY 2 cut(s) 202, 616
BsuRI GGCC 2 cut(s) 64, 117
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 4 cut(s) 291, 354, 612, 667
CfoI GCGC 1 cut(s) 49
CviAII CATG 6 cut(s) 40, 119, 286, 319, 415, 569
DdeI CTNAG 2 cut(s) 223, 696
DpnI GATC 3 cut(s) 204, 534, 618
DpnII GATC 3 cut(s) 202, 532, 616
DraIII CACNNNGTG 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 6 cut(s) 43, 122, 289, 322, 418, 572
FatI CATG 6 cut(s) 39, 118, 285, 318, 414, 568
FauNDI CATATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 480, 645
Fsp4HI GCNGC 2 cut(s) 480, 645
FspBI CTAG 3 cut(s) 60, 182, 611
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 480, 645
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 2 cut(s) 64, 117
HhaI GCGC 1 cut(s) 49
Hin1II CATG 6 cut(s) 43, 122, 289, 322, 418, 572
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 6 cut(s) 5, 99, 219, 227, 254, 433
HphI GGTGA 2 cut(s) 584, 616
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 207, 226, 232
Hpy188III TCNNGA 3 cut(s) 96, 251, 652
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 382, 503, 548
HpyCH4V TGCA 9 cut(s) 57, 80, 160, 239, 293, 352, 368, 418, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 223, 696
Hsp92II CATG 6 cut(s) 43, 122, 289, 322, 418, 572
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 3 cut(s) 202, 532, 616
Lsp1109I GCAGC 2 cut(s) 466, 656
LweI GCATC 1 cut(s) 682
MaeI CTAG 3 cut(s) 60, 182, 611
MaeIII GTNAC 2 cut(s) 434, 467
MalI GATC 3 cut(s) 204, 534, 618
MboI GATC 3 cut(s) 202, 532, 616
MboII GAAGA 1 cut(s) 151
MflI RGATCY 2 cut(s) 202, 616
MluCI AATT 7 cut(s) 244, 359, 406, 517, 601, 675, 685
MlyI GAGTC 4 cut(s) 14, 221, 248, 442
MnlI CCTC 3 cut(s) 193, 290, 469
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeI CATATG 1 cut(s) 177
NdeII GATC 3 cut(s) 202, 532, 616
NheI GCTAGC 1 cut(s) 610
NlaIII CATG 6 cut(s) 43, 122, 289, 322, 418, 572
NmuCI GTSAC 2 cut(s) 434, 467
NsbI TGCGCA 1 cut(s) 48
PctI GAATGC 1 cut(s) 647
PfeI GAWTC 2 cut(s) 99, 219
PkrI GCNGC 2 cut(s) 481, 646
PleI GAGTC 4 cut(s) 13, 221, 248, 441
PpsI GAGTC 4 cut(s) 13, 221, 248, 441
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 112
PstI CTGCAG 2 cut(s) 162, 484
PsuI RGATCY 2 cut(s) 202, 616
SalI GTCGAC 1 cut(s) 265
SatI GCNGC 2 cut(s) 480, 645
Sau3AI GATC 3 cut(s) 202, 532, 616
SchI GAGTC 4 cut(s) 14, 221, 248, 442
ScrFI CCNGG 1 cut(s) 114
SetI ASST 8 cut(s) 136, 159, 301, 358, 512, 583, 612, 685
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 2 cut(s) 158, 480
Sse9I AATT 7 cut(s) 244, 359, 406, 517, 601, 675, 685
SspMI CTAG 3 cut(s) 60, 182, 611
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 3 cut(s) 382, 503, 548
TaqI TCGA 1 cut(s) 266
TasI AATT 7 cut(s) 244, 359, 406, 517, 601, 675, 685
TfiI GAWTC 2 cut(s) 99, 219
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 2 cut(s) 434, 467
TseI GCWGC 2 cut(s) 479, 644
Tsp45I GTSAC 2 cut(s) 434, 467
TspDTI ATGAA 4 cut(s) 135, 274, 335, 390
TspRI CASTG 1 cut(s) 553
XapI RAATTY 4 cut(s) 359, 406, 601, 675
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 3 cut(s) 60, 182, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.