MD04G1043200.v1.1

domain in FBox and BRCT domain containing plant proteins

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
5103246 .. 5104227
982 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1043200.v1.1.491

Sequence Viewer

Length: 792 bp
ATGGAGAATTGTAGTTGTGGACAAGTTCCAGTTAATAAAGGGGATAAGTTCTCCAAGAGTCAGTGTCCGAGGACTGACTTGGAGACAGAGAAAATGCAGGGTAAGCCTTATGCTTCTCTGGTGGGAAGTCTCATGTATGCAACTATATGTACACGGCCTGACCTTGCTTTTATAACTGGAATGTTGGGAAGGTTTCAATCAAATCCAGGTGAAGCACATTGGATATCTGCCAAAAAGGTTCTAAGATATTTACAAAGAACCAAGAATTTCATGTTGGTTTATGGAAATGGCGAATCTTTGGAACTTGAAGGATATACTGACTCTGATTTGGCTGGTGATATAGATGATAGAAAATCGACCGGTGGCTATATCTTCATGTTAAATGGTGGTGCAGTTTCTTGGAAGAGTGCTAAGCAAACCGTGATAGCCACATCCACTATGGAGGCTGAGTTCGTAGCTTGTTTTGAAGGGATGAAACAAGCTGTGTGGTTGAAGAATTTTCTGACTGATTTAAAAATTGTAAAATCGATTCAGAAACCAGTAAGGATGTTTTGTGATAACAATTCTGCTGTGTTCTTTGCCAAGAATAATAGAAGAACTTCTGCCTCAAGGTTAATGGATGTAAAATTTCTTAAAGTAAGAGAGGAAGTGAAGAAGGGGATGATTGAAGTTCAGCACATCAGCACTGTTTTGATGGTGGCAGATCCTCTGACTAAAGCACTGCCTATTGGAGAGTTTCAGAAACATGTATCTCGGATGGGAGTGTTAGAAACTCTAGATCAGTGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

264

Amino Acids

29.5

Weight (kDa)

8.93

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 3 cut(s) 265, 496, 626
AfaI GTAC 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 745
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 5 cut(s) 197, 308, 467, 493, 668
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 2 cut(s) 458, 482
AluI AGCT 2 cut(s) 458, 482
Alw26I GTCTC 2 cut(s) 77, 134
AlwI GGATC 1 cut(s) 698
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 265, 496, 626
AsiGI ACCGGT 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 598
AsuHPI GGTGA 2 cut(s) 221, 347
BccI CCATC 2 cut(s) 688, 751
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 77, 134
BfaI CTAG 1 cut(s) 776
BlpI GCTNAGC 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 592
Bsa29I ATCGAT 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 29, 181, 539
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 6 cut(s) 431, 477, 552, 625, 666, 762
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 3 cut(s) 29, 181, 539
BsgI GTGCAG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 360
BsmAI GTCTC 2 cut(s) 77, 134
BsnI GGCC 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 2 cut(s) 703, 778
Bsp1720I GCTNAGC 1 cut(s) 411
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 527
BspPI GGATC 1 cut(s) 698
BsrFI RCCGGY 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 3 cut(s) 29, 181, 539
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 703, 778
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 421, 688
Bst6I CTCTTC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 149
BstDEI CTNAG 3 cut(s) 242, 411, 447
BstF5I GGATG 6 cut(s) 431, 477, 552, 625, 666, 762
BstKTI GATC 2 cut(s) 706, 781
BstMAI GTCTC 2 cut(s) 77, 134
BstMBI GATC 2 cut(s) 703, 778
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
Bsu15I ATCGAT 1 cut(s) 527
BsuRI GGCC 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 527
BtsCI GGATG 6 cut(s) 431, 477, 552, 625, 666, 762
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 4 cut(s) 68, 684, 719, 788
Cfr10I RCCGGY 1 cut(s) 359
ClaI ATCGAT 1 cut(s) 527
Csp6I GTAC 1 cut(s) 150
CspAI ACCGGT 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 467, 502
CviAII CATG 4 cut(s) 133, 271, 376, 746
CviJI RGCY 8 cut(s) 106, 157, 332, 366, 428, 446, 458, 482
CviKI_1 RGCY 8 cut(s) 106, 157, 332, 366, 428, 446, 458, 482
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 242, 411, 447
DpnI GATC 2 cut(s) 705, 780
DpnII GATC 2 cut(s) 703, 778
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Eco32I GATATC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 225
FaeI CATG 4 cut(s) 136, 274, 379, 749
FatI CATG 4 cut(s) 132, 270, 375, 745
FokI GGATG 6 cut(s) 418, 484, 559, 632, 673, 769
FspBI CTAG 1 cut(s) 776
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 360
Hin1II CATG 4 cut(s) 136, 274, 379, 749
HinfI GANTC 4 cut(s) 58, 293, 320, 529
HpaII CCGG 1 cut(s) 360
HphI GGTGA 2 cut(s) 221, 347
Hpy166II GTNNAC 2 cut(s) 20, 152
Hpy188I TCNGA 7 cut(s) 69, 325, 504, 534, 711, 741, 756
Hpy188III TCNNGA 1 cut(s) 776
Hpy8I GTNNAC 2 cut(s) 20, 152
HpyAV CCTTC 4 cut(s) 183, 302, 461, 649
HpyCH4III ACNGT 2 cut(s) 421, 688
HpyCH4V TGCA 3 cut(s) 97, 140, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 3 cut(s) 242, 411, 447
Hsp92II CATG 4 cut(s) 136, 274, 379, 749
Kzo9I GATC 2 cut(s) 703, 778
MaeI CTAG 1 cut(s) 776
MalI GATC 2 cut(s) 705, 780
MboI GATC 2 cut(s) 703, 778
MboII GAAGA 5 cut(s) 364, 415, 505, 606, 664
MflI RGATCY 1 cut(s) 703
MluCI AATT 6 cut(s) 7, 265, 496, 516, 562, 626
MlyI GAGTC 2 cut(s) 67, 314
MnlI CCTC 5 cut(s) 63, 436, 616, 637, 717
MroXI GAANNNNTTC 1 cut(s) 598
MseI TTAA 5 cut(s) 33, 380, 512, 614, 633
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 703, 778
NlaIII CATG 4 cut(s) 136, 274, 379, 749
NspI RCATGY 1 cut(s) 749
PciI ACATGT 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 293, 529
PinAI ACCGGT 1 cut(s) 359
PleI GAGTC 2 cut(s) 66, 314
PpsI GAGTC 2 cut(s) 66, 314
PscI ACATGT 1 cut(s) 745
PsiI TTATAA 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 5 cut(s) 33, 380, 512, 614, 633
Sau3AI GATC 2 cut(s) 703, 778
SchI GAGTC 2 cut(s) 67, 314
ScrFI CCNGG 1 cut(s) 207
SetI ASST 7 cut(s) 165, 194, 211, 240, 460, 484, 614
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
Sse9I AATT 6 cut(s) 7, 265, 496, 516, 562, 626
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 421, 688
TaqI TCGA 2 cut(s) 356, 527
TasI AATT 6 cut(s) 7, 265, 496, 516, 562, 626
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 2 cut(s) 293, 529
Tru1I TTAA 5 cut(s) 33, 380, 512, 614, 633
Tru9I TTAA 5 cut(s) 33, 380, 512, 614, 633
TscAI CASTG 4 cut(s) 68, 691, 726, 788
TspDTI ATGAA 3 cut(s) 259, 364, 488
TspRI CASTG 4 cut(s) 68, 691, 726, 788
XapI RAATTY 3 cut(s) 265, 496, 626
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.