DNA RNA polymerases superfamily protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| gag_pre-integrs | PF13976 | 110 - 156 | 3.3e-12 | GAG-pre-integrase domain |
| rve | PF00665 | 173 - 279 | 1.1e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 352 - 407 | 3e-08 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 561 - 806 | 2.9e-77 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 459, 1883, 1905 |
| Acc65I | GGTACC | 1 cut(s) | 1387 |
| AccB1I | GGYRCC | 2 cut(s) | 26, 1387 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1324, 1438 |
| AccI | GTMKAC | 3 cut(s) | 749, 818, 2139 |
| AclWI | GGATC | 4 cut(s) | 1367, 1586, 1593, 1703 |
| AcoI | YGGCCR | 1 cut(s) | 1647 |
| AcuI | CTGAAG | 4 cut(s) | 696, 776, 1083, 1858 |
| AfaI | GTAC | 4 cut(s) | 205, 292, 1389, 2527 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 769, 1048, 1324, 1438, 1494, 1526, 2490 |
| AflII | CTTAAG | 4 cut(s) | 286, 386, 940, 2051 |
| AgeI | ACCGGT | 1 cut(s) | 1414 |
| AjnI | CCWGG | 2 cut(s) | 1212, 2002 |
| Alw21I | GWGCWC | 2 cut(s) | 905, 973 |
| Alw26I | GTCTC | 1 cut(s) | 1187 |
| Alw44I | GTGCAC | 1 cut(s) | 901 |
| AlwI | GGATC | 4 cut(s) | 1367, 1586, 1593, 1703 |
| Ama87I | CYCGRG | 1 cut(s) | 907 |
| AoxI | GGCC | 2 cut(s) | 760, 1647 |
| ApaLI | GTGCAC | 1 cut(s) | 901 |
| ApeKI | GCWGC | 4 cut(s) | 688, 1166, 1328, 1613 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2528, 2560 |
| AsiGI | ACCGGT | 1 cut(s) | 1414 |
| Asp718I | GGTACC | 1 cut(s) | 1387 |
| AspA2I | CCTAGG | 2 cut(s) | 1493, 2272 |
| AspS9I | GGNCC | 4 cut(s) | 542, 773, 2269, 2407 |
| AsuHPI | GGTGA | 4 cut(s) | 944, 2288, 2414, 2477 |
| AsuII | TTCGAA | 1 cut(s) | 2032 |
| AsuNHI | GCTAGC | 1 cut(s) | 2204 |
| AvaI | CYCGRG | 1 cut(s) | 907 |
| AvaII | GGWCC | 4 cut(s) | 542, 773, 2269, 2407 |
| AvrII | CCTAGG | 2 cut(s) | 1493, 2272 |
| BaeGI | GKGCMC | 1 cut(s) | 905 |
| BalI | TGGCCA | 1 cut(s) | 1649 |
| BanI | GGYRCC | 2 cut(s) | 26, 1387 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2013, 2045 |
| BbsI | GAAGAC | 1 cut(s) | 1251 |
| Bbv12I | GWGCWC | 2 cut(s) | 905, 973 |
| BbvI | GCAGC | 4 cut(s) | 700, 1178, 1315, 1600 |
| BciT130I | CCWGG | 2 cut(s) | 1214, 2004 |
| BcoDI | GTCTC | 1 cut(s) | 1187 |
| BfmI | CTRYAG | 7 cut(s) | 492, 686, 984, 1254, 1310, 1725, 1986 |
| BfrI | CTTAAG | 4 cut(s) | 286, 386, 940, 2051 |
| BglII | AGATCT | 2 cut(s) | 716, 1499 |
| BisI | GCNGC | 4 cut(s) | 689, 1167, 1329, 1614 |
| BlnI | CCTAGG | 2 cut(s) | 1493, 2272 |
| BlsI | GCNGC | 4 cut(s) | 690, 1168, 1330, 1615 |
| BmcAI | AGTACT | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 2 cut(s) | 1214, 2004 |
| Bme18I | GGWCC | 4 cut(s) | 542, 773, 2269, 2407 |
| BmeT110I | CYCGRG | 1 cut(s) | 907 |
| BmgT120I | GGNCC | 4 cut(s) | 542, 773, 2269, 2407 |
| BmiI | GGNNCC | 4 cut(s) | 28, 774, 1389, 2409 |
| BmrFI | CCNGG | 2 cut(s) | 1214, 2004 |
| BmsI | GCATC | 4 cut(s) | 1042, 1043, 1416, 2291 |
| BmtI | GCTAGC | 1 cut(s) | 2208 |
| BpiI | GAAGAC | 1 cut(s) | 1251 |
| Bpu14I | TTCGAA | 1 cut(s) | 2032 |
| BpuEI | CTTGAG | 1 cut(s) | 463 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1356, 1362, 1452, 1590 |
| BsaJI | CCNNGG | 4 cut(s) | 906, 1493, 1650, 2272 |
| BsaWI | WCCGGW | 1 cut(s) | 1414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1834, 1864 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 769, 1048, 1324, 1438, 1494, 1526, 2490 |
| Bse118I | RCCGGY | 1 cut(s) | 1414 |
| Bse1I | ACTGG | 1 cut(s) | 2404 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1356, 1362, 1452, 1590 |
| BseBI | CCWGG | 2 cut(s) | 1214, 2004 |
| BseDI | CCNNGG | 4 cut(s) | 906, 1493, 1650, 2272 |
| BseGI | GGATG | 5 cut(s) | 203, 1058, 1222, 1933, 2134 |
| BseJI | GATNNNNATC | 4 cut(s) | 1356, 1362, 1452, 1590 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 769, 1048, 1324, 1438, 1494, 1526, 2490 |
| BseMII | CTCAG | 5 cut(s) | 744, 827, 1413, 1464, 1646 |
| BseNI | ACTGG | 1 cut(s) | 2404 |
| BseSI | GKGCMC | 1 cut(s) | 905 |
| BseXI | GCAGC | 4 cut(s) | 700, 1178, 1315, 1600 |
| BshFI | GGCC | 2 cut(s) | 762, 1649 |
| BshNI | GGYRCC | 2 cut(s) | 26, 1387 |
| BshTI | ACCGGT | 1 cut(s) | 1414 |
| BsiHKAI | GWGCWC | 2 cut(s) | 905, 973 |
| BsiHKCI | CYCGRG | 1 cut(s) | 907 |
| BsiSI | CCGG | 1 cut(s) | 1415 |
| BslFI | GGGAC | 1 cut(s) | 2393 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 769, 1048, 1324, 1438, 1494, 1526, 2490 |
| BsmAI | GTCTC | 1 cut(s) | 1187 |
| BsmFI | GGGAC | 1 cut(s) | 2393 |
| BsnI | GGCC | 2 cut(s) | 762, 1649 |
| BsoBI | CYCGRG | 1 cut(s) | 907 |
| Bsp119I | TTCGAA | 1 cut(s) | 2032 |
| Bsp1286I | GDGCHC | 2 cut(s) | 905, 973 |
| Bsp1407I | TGTACA | 1 cut(s) | 2525 |
| Bsp19I | CCATGG | 1 cut(s) | 1650 |
| BspANI | GGCC | 2 cut(s) | 762, 1649 |
| BspCNI | CTCAG | 5 cut(s) | 745, 826, 1414, 1465, 1645 |
| BspHI | TCATGA | 1 cut(s) | 1588 |
| BspLI | GGNNCC | 4 cut(s) | 28, 774, 1389, 2409 |
| BspMAI | CTGCAG | 3 cut(s) | 496, 690, 1258 |
| BspOI | GCTAGC | 1 cut(s) | 2208 |
| BspPI | GGATC | 4 cut(s) | 1367, 1586, 1593, 1703 |
| BspT104I | TTCGAA | 1 cut(s) | 2032 |
| BspT107I | GGYRCC | 2 cut(s) | 26, 1387 |
| BspTI | CTTAAG | 4 cut(s) | 286, 386, 940, 2051 |
| BsrFI | RCCGGY | 1 cut(s) | 1414 |
| BsrGI | TGTACA | 1 cut(s) | 2525 |
| BsrI | ACTGG | 1 cut(s) | 2404 |
| BssAI | RCCGGY | 1 cut(s) | 1414 |
| BssECI | CCNNGG | 4 cut(s) | 906, 1493, 1650, 2272 |
| BssNAI | GTATAC | 3 cut(s) | 750, 819, 2140 |
| BssT1I | CCWWGG | 3 cut(s) | 1493, 1650, 2272 |
| Bst1107I | GTATAC | 3 cut(s) | 750, 819, 2140 |
| Bst2UI | CCWGG | 2 cut(s) | 1214, 2004 |
| Bst4CI | ACNGT | 7 cut(s) | 301, 446, 630, 1111, 1939, 2152, 2181 |
| Bst6I | CTCTTC | 2 cut(s) | 2366, 2453 |
| BstAFI | CTTAAG | 4 cut(s) | 286, 386, 940, 2051 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 900 |
| BstAUI | TGTACA | 1 cut(s) | 2525 |
| BstBI | TTCGAA | 1 cut(s) | 2032 |
| BstC8I | GCNNGC | 5 cut(s) | 760, 764, 1031, 2058, 2206 |
| BstDSI | CCRYGG | 1 cut(s) | 1650 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2488 |
| BstF5I | GGATG | 5 cut(s) | 203, 1058, 1222, 1933, 2134 |
| BstMAI | GTCTC | 1 cut(s) | 1187 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 17, 130, 358, 653, 900, 1655, 1895 |
| BstNI | CCWGG | 2 cut(s) | 1214, 2004 |
| BstNSI | RCATGY | 1 cut(s) | 2351 |
| BstSCI | CCNGG | 2 cut(s) | 1212, 2002 |
| BstSFI | CTRYAG | 7 cut(s) | 492, 686, 984, 1254, 1310, 1725, 1986 |
| BstSLI | GKGCMC | 1 cut(s) | 905 |
| BstV1I | GCAGC | 4 cut(s) | 700, 1178, 1315, 1600 |
| BstV2I | GAAGAC | 1 cut(s) | 1251 |
| BstX2I | RGATCY | 3 cut(s) | 716, 1499, 1708 |
| BstYI | RGATCY | 3 cut(s) | 716, 1499, 1708 |
| BstZ17I | GTATAC | 3 cut(s) | 750, 819, 2140 |
| BsuRI | GGCC | 2 cut(s) | 762, 1649 |
| BtgI | CCRYGG | 1 cut(s) | 1650 |
| BtsCI | GGATG | 5 cut(s) | 203, 1058, 1222, 1933, 2134 |
| BtsI | GCAGTG | 2 cut(s) | 1036, 1643 |
| BtsIMutI | CAGTG | 6 cut(s) | 297, 528, 1036, 1116, 1643, 1692 |
| Cac8I | GCNNGC | 5 cut(s) | 760, 764, 1031, 2058, 2206 |
| CciI | TCATGA | 1 cut(s) | 1588 |
| Cfr10I | RCCGGY | 1 cut(s) | 1414 |
| Cfr13I | GGNCC | 4 cut(s) | 542, 773, 2269, 2407 |
| Csp6I | GTAC | 4 cut(s) | 204, 291, 1388, 2526 |
| CspAI | ACCGGT | 1 cut(s) | 1414 |
| CviQI | GTAC | 4 cut(s) | 204, 291, 1388, 2526 |
| DraI | TTTAAA | 3 cut(s) | 225, 661, 1947 |
| EaeI | YGGCCR | 1 cut(s) | 1647 |
| Eam1104I | CTCTTC | 2 cut(s) | 2366, 2453 |
| EarI | CTCTTC | 2 cut(s) | 2366, 2453 |
| Eco130I | CCWWGG | 3 cut(s) | 1493, 1650, 2272 |
| Eco32I | GATATC | 1 cut(s) | 535 |
| Eco47I | GGWCC | 4 cut(s) | 542, 773, 2269, 2407 |
| Eco57I | CTGAAG | 4 cut(s) | 696, 776, 1083, 1858 |
| Eco88I | CYCGRG | 1 cut(s) | 907 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2488 |
| EcoO109I | RGGNCCY | 3 cut(s) | 773, 2269, 2407 |
| EcoRI | GAATTC | 2 cut(s) | 734, 2440 |
| EcoRII | CCWGG | 2 cut(s) | 1212, 2002 |
| EcoRV | GATATC | 1 cut(s) | 535 |
| EcoT14I | CCWWGG | 3 cut(s) | 1493, 1650, 2272 |
| EcoT22I | ATGCAT | 1 cut(s) | 216 |
| ErhI | CCWWGG | 3 cut(s) | 1493, 1650, 2272 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 26, 58, 1779, 1811 |
| FaqI | GGGAC | 1 cut(s) | 2393 |
| FblI | GTMKAC | 3 cut(s) | 749, 818, 2139 |
| Fnu4HI | GCNGC | 4 cut(s) | 689, 1167, 1329, 1614 |
| FokI | GGATG | 5 cut(s) | 210, 1065, 1229, 1940, 2141 |
| Fsp4HI | GCNGC | 4 cut(s) | 689, 1167, 1329, 1614 |
| GluI | GCNGC | 4 cut(s) | 689, 1167, 1329, 1614 |
| HaeIII | GGCC | 2 cut(s) | 762, 1649 |
| HapII | CCGG | 1 cut(s) | 1415 |
| HindIII | AAGCTT | 3 cut(s) | 654, 2058, 2238 |
| HinfI | GANTC | 9 cut(s) | 1100, 1400, 1453, 1628, 1667, 1675, 1868, 2087, 2387 |
| HpaII | CCGG | 1 cut(s) | 1415 |
| HphI | GGTGA | 4 cut(s) | 944, 2288, 2414, 2477 |
| Hpy166II | GTNNAC | 5 cut(s) | 542, 750, 819, 903, 2140 |
| Hpy188I | TCNGA | 4 cut(s) | 634, 721, 1452, 1877 |
| Hpy188III | TCNNGA | 7 cut(s) | 480, 606, 794, 1589, 1747, 2064, 2368 |
| Hpy8I | GTNNAC | 5 cut(s) | 542, 750, 819, 903, 2140 |
| HpyAV | CCTTC | 7 cut(s) | 99, 351, 659, 800, 1612, 1882, 2260 |
| HpyCH4III | ACNGT | 7 cut(s) | 301, 446, 630, 1111, 1939, 2152, 2181 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 17, 130, 358, 653, 900, 1655, 1895 |
| KpnI | GGTACC | 1 cut(s) | 1391 |
| LmnI | GCTCC | 1 cut(s) | 891 |
| Lsp1109I | GCAGC | 4 cut(s) | 700, 1178, 1315, 1600 |
| LweI | GCATC | 4 cut(s) | 1042, 1043, 1416, 2291 |
| MaeIII | GTNAC | 3 cut(s) | 614, 2340, 2465 |
| MboII | GAAGA | 4 cut(s) | 1256, 2024, 2383, 2470 |
| MflI | RGATCY | 3 cut(s) | 716, 1499, 1708 |
| MhlI | GDGCHC | 2 cut(s) | 905, 973 |
| MlsI | TGGCCA | 1 cut(s) | 1649 |
| MluNI | TGGCCA | 1 cut(s) | 1649 |
| MlyI | GAGTC | 4 cut(s) | 1109, 1409, 1684, 1862 |
| MmeI | TCCRAC | 3 cut(s) | 18, 1619, 2134 |
| MnlI | CCTC | 6 cut(s) | 748, 916, 1378, 1576, 2304, 2398 |
| Mox20I | TGGCCA | 1 cut(s) | 1649 |
| Mph1103I | ATGCAT | 1 cut(s) | 216 |
| MscI | TGGCCA | 1 cut(s) | 1649 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1041 |
| Msp20I | TGGCCA | 1 cut(s) | 1649 |
| MspCI | CTTAAG | 4 cut(s) | 286, 386, 940, 2051 |
| MspI | CCGG | 1 cut(s) | 1415 |
| MspR9I | CCNGG | 2 cut(s) | 1214, 2004 |
| MvaI | CCWGG | 2 cut(s) | 1214, 2004 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 17, 130, 358, 653, 900, 1655, 1895 |
| NcoI | CCATGG | 1 cut(s) | 1650 |
| NheI | GCTAGC | 1 cut(s) | 2204 |
| NlaIV | GGNNCC | 4 cut(s) | 28, 774, 1389, 2409 |
| NmuCI | GTSAC | 2 cut(s) | 2340, 2465 |
| NsiI | ATGCAT | 1 cut(s) | 216 |
| NspI | RCATGY | 1 cut(s) | 2351 |
| NspV | TTCGAA | 1 cut(s) | 2032 |
| PagI | TCATGA | 1 cut(s) | 1588 |
| PfeI | GAWTC | 5 cut(s) | 1453, 1628, 1667, 2087, 2387 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1324, 1438 |
| PfoI | TCCNGGA | 1 cut(s) | 1212 |
| PinAI | ACCGGT | 1 cut(s) | 1414 |
| PkrI | GCNGC | 4 cut(s) | 690, 1168, 1330, 1615 |
| PleI | GAGTC | 4 cut(s) | 1108, 1408, 1683, 1862 |
| PpsI | GAGTC | 4 cut(s) | 1108, 1408, 1683, 1862 |
| PpuMI | RGGWCCY | 3 cut(s) | 773, 2269, 2407 |
| PsiI | TTATAA | 3 cut(s) | 459, 1883, 1905 |
| Psp5II | RGGWCCY | 3 cut(s) | 773, 2269, 2407 |
| Psp6I | CCWGG | 2 cut(s) | 1212, 2002 |
| PspGI | CCWGG | 2 cut(s) | 1212, 2002 |
| PspN4I | GGNNCC | 4 cut(s) | 28, 774, 1389, 2409 |
| PspPI | GGNCC | 4 cut(s) | 542, 773, 2269, 2407 |
| PspPPI | RGGWCCY | 3 cut(s) | 773, 2269, 2407 |
| PstI | CTGCAG | 3 cut(s) | 496, 690, 1258 |
| PsuI | RGATCY | 3 cut(s) | 716, 1499, 1708 |
| RsaI | GTAC | 4 cut(s) | 205, 292, 1389, 2527 |
| RsaNI | GTAC | 4 cut(s) | 204, 291, 1388, 2526 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1041 |
| SatI | GCNGC | 4 cut(s) | 689, 1167, 1329, 1614 |
| Sau96I | GGNCC | 4 cut(s) | 542, 773, 2269, 2407 |
| ScaI | AGTACT | 1 cut(s) | 292 |
| SchI | GAGTC | 4 cut(s) | 1109, 1409, 1684, 1862 |
| ScrFI | CCNGG | 2 cut(s) | 1214, 2004 |
| SduI | GDGCHC | 2 cut(s) | 905, 973 |
| SfaNI | GCATC | 4 cut(s) | 1042, 1043, 1416, 2291 |
| SfcI | CTRYAG | 7 cut(s) | 492, 686, 984, 1254, 1310, 1725, 1986 |
| SfuI | TTCGAA | 1 cut(s) | 2032 |
| SinI | GGWCC | 4 cut(s) | 542, 773, 2269, 2407 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1041 |
| SmlI | CTYRAG | 5 cut(s) | 286, 386, 478, 940, 2051 |
| SmoI | CTYRAG | 5 cut(s) | 286, 386, 478, 940, 2051 |
| StyD4I | CCNGG | 2 cut(s) | 1212, 2002 |
| StyI | CCWWGG | 3 cut(s) | 1493, 1650, 2272 |
| TaaI | ACNGT | 7 cut(s) | 301, 446, 630, 1111, 1939, 2152, 2181 |
| TaqI | TCGA | 2 cut(s) | 153, 2032 |
| TatI | WGTACW | 2 cut(s) | 290, 2525 |
| TfiI | GAWTC | 5 cut(s) | 1453, 1628, 1667, 2087, 2387 |
| TscAI | CASTG | 6 cut(s) | 304, 535, 1043, 1116, 1643, 1692 |
| TseFI | GTSAC | 2 cut(s) | 2340, 2465 |
| TseI | GCWGC | 4 cut(s) | 688, 1166, 1328, 1613 |
| Tsp45I | GTSAC | 2 cut(s) | 2340, 2465 |
| TspGWI | ACGGA | 1 cut(s) | 861 |
| TspRI | CASTG | 6 cut(s) | 304, 535, 1043, 1116, 1643, 1692 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1324, 1438 |
| Vha464I | CTTAAG | 4 cut(s) | 286, 386, 940, 2051 |
| VneI | GTGCAC | 1 cut(s) | 901 |
| VpaK11BI | GGWCC | 4 cut(s) | 542, 773, 2269, 2407 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2488 |
| XbaI | TCTAGA | 2 cut(s) | 605, 2063 |
| XceI | RCATGY | 1 cut(s) | 2351 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 924, 1005 |
| XmaJI | CCTAGG | 2 cut(s) | 1493, 2272 |
| XmiI | GTMKAC | 3 cut(s) | 749, 818, 2139 |
| ZrmI | AGTACT | 1 cut(s) | 292 |
| Zsp2I | ATGCAT | 1 cut(s) | 216 |