RchiOBHm_Chr4g0385651

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001006
Physical Location & Seq
Reverse (-)
1216708 .. 1217677
970 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35909

Sequence Viewer

Length: 786 bp
ATGCAGGGTTGGAAGTCAGGTGATGCACCAATATCTAAGGGAGATAGGCTGCACAAGGGTCAGTGTCCTAAGAATGTGTTGGAAGCAGAAAGCATGAAAAATGTGCCTTATGCAAGATTGGTGGGGAGCTTGATGTATGCTCAAATCTGTACAAGGCCTGATATATCATTTGCAGTAAATATGCTTTCAAGGTTTCAATCAAATGCAGGCCATGAACATTGGATAGCAGGAAAGAAGGTGTTGAGGTACCTGAAGAAGACTAAGGATCACATGTTGGTTTACAGAAAAATTGATGAGCAAGAACTTGAGGTGGAGGCCTACACAGATGCATCCTACAAATCAGACATGGATGACTTGAAATCAACATCTGGATACATATTTCTTCTAGCAGGTGGAGCCATTTTGTGGAAAACTGCAAAGCAGACCTTGACAGCAACGTCAACTTTTCAAGCTGAATATATTGCCATTTATGAAGCAACAGGACATGCATTATGGTTGAGAAATTTTATTTCTCATTTGAAGCTAATAAGCTCTGTAGAAAGGCCTATGGTGATTTACTGTGATAATGCATCAGCAATGTTCTTTTCAAAGAACAACAAGAGGTCTTCAGGTTCAAGGAACATTGATGTCAAGTACTTTGCAGTGAGAGAAAGTGTTAGGGATGAAGAGATCGAGGTTGTAAAGATTGAAACTAAAGATCAGTTAGCAGATCCATTGACAAAAGCTTTACCAGTAGCTGATTTTGTCAAGCATGCTGCACATATGGGAATTAAAGACATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

261

Amino Acids

29.49

Weight (kDa)

8.91

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
AasI GACNNNNNNGTC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 380
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 405
AclWI GGATC 2 cut(s) 273, 704
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 2 cut(s) 272, 591
AfaI GTAC 3 cut(s) 151, 248, 635
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 8 cut(s) 189, 197, 358, 449, 520, 588, 615, 689
AluBI AGCT 6 cut(s) 129, 452, 523, 531, 725, 737
AluI AGCT 6 cut(s) 129, 452, 523, 531, 725, 737
AlwI GGATC 2 cut(s) 273, 704
AlwNI CAGNNNCTG 1 cut(s) 737
AoxI GGCC 4 cut(s) 155, 208, 315, 542
ApeKI GCWGC 2 cut(s) 49, 755
ApoI RAATTY 1 cut(s) 502
Asp718I GGTACC 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 32, 562
BanI GGYRCC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 263, 597
BbvI GCAGC 2 cut(s) 36, 742
BciVI GTATCC 1 cut(s) 365
BfaI CTAG 2 cut(s) 386, 784
BfmI CTRYAG 1 cut(s) 534
BfuAI ACCTGC 1 cut(s) 380
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 2 cut(s) 50, 756
BlsI GCNGC 2 cut(s) 51, 757
BmcAI AGTACT 1 cut(s) 635
BmiI GGNNCC 2 cut(s) 248, 397
BmsI GCATC 4 cut(s) 13, 316, 338, 578
BpiI GAAGAC 2 cut(s) 263, 597
BpuEI CTTGAG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 731
Bse3DI GCAATG 1 cut(s) 582
BseGI GGATG 3 cut(s) 329, 355, 667
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 731
BseXI GCAGC 2 cut(s) 36, 742
BsgI GTGCAG 2 cut(s) 35, 741
BshFI GGCC 4 cut(s) 157, 210, 317, 544
BshNI GGYRCC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 405
BsnI GGCC 4 cut(s) 157, 210, 317, 544
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 4 cut(s) 265, 669, 697, 709
BspANI GGCC 4 cut(s) 157, 210, 317, 544
BspLI GGNNCC 2 cut(s) 248, 397
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 273, 704
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 582
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 731
BssMI GATC 4 cut(s) 265, 669, 697, 709
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 208, 753
BstDEI CTNAG 3 cut(s) 36, 69, 261
BstF5I GGATG 3 cut(s) 329, 355, 667
BstKTI GATC 4 cut(s) 268, 672, 700, 712
BstMBI GATC 4 cut(s) 265, 669, 697, 709
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNSI RCATGY 3 cut(s) 274, 488, 755
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 36, 742
BstV2I GAAGAC 2 cut(s) 263, 597
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 4 cut(s) 157, 210, 317, 544
BtsCI GGATG 3 cut(s) 329, 355, 667
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 68, 648
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 208, 753
CaiI CAGNNNCTG 1 cut(s) 737
Csp6I GTAC 3 cut(s) 150, 247, 634
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 6 cut(s) 94, 212, 271, 346, 485, 752
CviQI GTAC 3 cut(s) 150, 247, 634
DdeI CTNAG 3 cut(s) 36, 69, 261
DpnI GATC 4 cut(s) 267, 671, 699, 711
DpnII GATC 4 cut(s) 265, 669, 697, 709
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco147I AGGCCT 3 cut(s) 157, 317, 544
Eco57I CTGAAG 2 cut(s) 272, 591
EcoT22I ATGCAT 3 cut(s) 331, 490, 571
FaeI CATG 6 cut(s) 97, 215, 274, 349, 488, 755
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 6 cut(s) 93, 211, 270, 345, 484, 751
FauNDI CATATG 1 cut(s) 762
Fnu4HI GCNGC 2 cut(s) 50, 756
FokI GGATG 3 cut(s) 316, 362, 674
Fsp4HI GCNGC 2 cut(s) 50, 756
FspBI CTAG 2 cut(s) 386, 784
GluI GCNGC 2 cut(s) 50, 756
HaeIII GGCC 4 cut(s) 157, 210, 317, 544
Hin1II CATG 6 cut(s) 97, 215, 274, 349, 488, 755
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 723
HphI GGTGA 2 cut(s) 32, 562
Hpy166II GTNNAC 2 cut(s) 280, 441
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 2 cut(s) 280, 441
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 3 cut(s) 36, 69, 261
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 6 cut(s) 97, 215, 274, 349, 488, 755
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 265, 669, 697, 709
LmnI GCTCC 2 cut(s) 126, 395
Lsp1109I GCAGC 2 cut(s) 36, 742
LweI GCATC 4 cut(s) 13, 316, 338, 578
MaeI CTAG 2 cut(s) 386, 784
MaeII ACGT 1 cut(s) 437
MalI GATC 4 cut(s) 267, 671, 699, 711
MboI GATC 4 cut(s) 265, 669, 697, 709
MboII GAAGA 5 cut(s) 265, 268, 374, 597, 677
MflI RGATCY 1 cut(s) 709
MluCI AATT 3 cut(s) 288, 502, 768
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 237, 301, 307, 594, 667
Mph1103I ATGCAT 3 cut(s) 331, 490, 571
MseI TTAA 1 cut(s) 771
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeI CATATG 1 cut(s) 762
NdeII GATC 4 cut(s) 265, 669, 697, 709
NlaIII CATG 6 cut(s) 97, 215, 274, 349, 488, 755
NlaIV GGNNCC 2 cut(s) 248, 397
NsiI ATGCAT 3 cut(s) 331, 490, 571
NspI RCATGY 3 cut(s) 274, 488, 755
PaeI GCATGC 1 cut(s) 755
PaqCI CACCTGC 1 cut(s) 380
PceI AGGCCT 3 cut(s) 157, 317, 544
PciI ACATGT 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 2 cut(s) 51, 757
PscI ACATGT 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 248, 397
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 3 cut(s) 151, 248, 635
RsaNI GTAC 3 cut(s) 150, 247, 634
SaqAI TTAA 1 cut(s) 771
SatI GCNGC 2 cut(s) 50, 756
Sau3AI GATC 4 cut(s) 265, 669, 697, 709
ScaI AGTACT 1 cut(s) 635
SfaNI GCATC 4 cut(s) 13, 316, 338, 578
SfcI CTRYAG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SphI GCATGC 1 cut(s) 755
Sse9I AATT 3 cut(s) 288, 502, 768
SseBI AGGCCT 3 cut(s) 157, 317, 544
SspMI CTAG 2 cut(s) 386, 784
StuI AGGCCT 3 cut(s) 157, 317, 544
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 672
TasI AATT 3 cut(s) 288, 502, 768
TatI WGTACW 2 cut(s) 149, 633
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 2 cut(s) 68, 648
TseI GCWGC 2 cut(s) 49, 755
TspDTI ATGAA 4 cut(s) 110, 228, 486, 678
TspRI CASTG 2 cut(s) 68, 648
Van91I CCANNNNNTGG 1 cut(s) 405
XapI RAATTY 1 cut(s) 502
XceI RCATGY 3 cut(s) 274, 488, 755
XspI CTAG 2 cut(s) 386, 784
ZrmI AGTACT 1 cut(s) 635
Zsp2I ATGCAT 3 cut(s) 331, 490, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.