Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

65219433 .. 65223417

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCACTTGTAACTCATTTTGATTTAGAGTTACATCAAATGGATGTGAAAACAGCTGTTCTAAATGAGAACTTAGAGGAGGAAGTCTATATGAATCAACCTGAAGGCTTCTCATCAAAAGGAAAGGAACACGTGGTCTGTACAAGACCGGACATCGGTATTGCGGTTGGGATGTTAGGAAGGTACCAAAGCAATCCAGGAATGGATCATTGGAAAGCTGCAAATGTTTTCTTCTCCAAAAATGATAGGTATTCTCAAGGTGCTAAACTAATTGATCTAGAATACCTTGCCATGAAGGAGGATGTTCAGAAACAAATAGTGTCCATTGTTAACATAGGAACAAAACTCATGATTGCGGACCCACTTACAAAAGGGTTAGGACCAAAGGCATTCATTGAGCATGCCGAAAGAATGGGTCTTTGTCATAACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

5.83

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 47	2.9e-08	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AciI	CCGC	2 cut(s)	164, 356
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	133
AfaI	GTAC	2 cut(s)	142, 185
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	2 cut(s)	56, 218
AluI	AGCT	2 cut(s)	56, 218
AlwI	GGATC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	218
Asp718I	GGTACC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	358, 380
AvaII	GGWCC	2 cut(s)	358, 380
BanI	GGYRCC	1 cut(s)	183
BbrPI	CACGTG	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	358, 380
BmgT120I	GGNCC	2 cut(s)	358, 380
BmiI	GGNNCC	2 cut(s)	185, 360
BmrFI	CCNGG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	3 cut(s)	49, 177, 307
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	205, 274
BspACI	CCGC	2 cut(s)	164, 356
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	185, 360
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	140
BssMI	GATC	2 cut(s)	205, 274
Bst2UI	CCWGG	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	49, 177, 307
BstKTI	GATC	2 cut(s)	208, 277
BstMBI	GATC	2 cut(s)	205, 274
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	49, 177, 307
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	358, 380
Csp6I	GTAC	2 cut(s)	141, 184
CviAII	CATG	4 cut(s)	292, 349, 401, 432
CviJI	RGCY	3 cut(s)	56, 108, 218
CviKI_1	RGCY	3 cut(s)	56, 108, 218
CviQI	GTAC	2 cut(s)	141, 184
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	207, 276
DpnII	GATC	2 cut(s)	205, 274
Eco47I	GGWCC	2 cut(s)	358, 380
Eco57I	CTGAAG	1 cut(s)	123
Eco72I	CACGTG	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	4 cut(s)	295, 352, 404, 435
FaiI	YATR	8 cut(s)	90, 92, 293, 335, 350, 402, 426, 433
FatI	CATG	4 cut(s)	291, 348, 400, 431
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	3 cut(s)	56, 184, 314
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	4 cut(s)	295, 352, 404, 435
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	94
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	278, 349
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	98, 174, 289
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	295, 352, 404, 435
KpnI	GGTACC	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	205, 274
LpnPI	CCDG	4 cut(s)	114, 162, 183, 210
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	10, 30
MalI	GATC	2 cut(s)	207, 276
MboI	GATC	2 cut(s)	205, 274
MboII	GAAGA	1 cut(s)	223
MluCI	AATT	1 cut(s)	270
MnlI	CCTC	3 cut(s)	70, 73, 292
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	205, 274
NlaIII	CATG	4 cut(s)	295, 352, 404, 435
NlaIV	GGNNCC	2 cut(s)	185, 360
NspI	RCATGY	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	404
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	220
PmaCI	CACGTG	1 cut(s)	133
PmlI	CACGTG	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	196
PspCI	CACGTG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	185, 360
PspPI	GGNCC	2 cut(s)	358, 380
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	142, 185
RsaNI	GTAC	2 cut(s)	141, 184
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	205, 274
Sau96I	GGNCC	2 cut(s)	358, 380
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	8 cut(s)	58, 103, 135, 185, 220, 251, 262, 288
SinI	GGWCC	2 cut(s)	358, 380
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	2 cut(s)	164, 356
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	135
TasI	AATT	1 cut(s)	270
TatI	WGTACW	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	107, 308, 382
VpaK11BI	GGWCC	2 cut(s)	358, 380
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.