Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

67747617 .. 67749079

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTCTAGTAGCTCATTATGATATGGAATTACATCAAATGGATGTCAAAACTGCATTCCTCAACGGAGATTTGGATGAGGAGATTTATATGAAACAACCAGTAGGTTTCATAGAGTCTGGAAAGGAACACTTAGTGTGCAGATTGAATAAATCCATTTATGGATTGAAGCAGGCATCGAGGCAATGGTACCTAAAATTTGATGCAGTAGTTACTTCTTCTGGTTTTGTTGAAAATCTTGTTGATGAATGTGTATACATGAAAATCAGCGGCAGAAATTTTATTTTTCTGGTGTTATATGTTGATGATATTCTGTTGGCAAGCACTGATAAAGGGTTATTGCAGCAAACAAAGCATTTTCTTTCTGAAAATTTTGACATGAAGGATTTGGGAGATGCTTCATATGTTCTAGGGATTGAAATTACCAGGGATCGATCTAAACATCTTTTAGGTTTATCTCAGCAAGCCTACATTTCAAAAGTGTTGAAGAGATTTGAAATGCATACTTGTTCACCTGGAGCTGCACCTATGTCAAAAGGTGACAAGTTGAACAAAAATCAGTGTCCTAAGAATGAGTTAGAGAAGGAAGACATGAAAACCAAACCTTATTCCAGATTGGTGGGAAGCCTAATGTATGCACAAGTGTGCACTAGGCCTGATTTAGCCTATGCAGTGGGTATGTTGGCAAGATTTCAGTCAAATCCAGGACATGAACACTGGATTGCTGGAAAGAAGGTGTTAAGATATCTTCAGAAATCCAAGGGTTATAGTTTGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2

Protein Analysis

260

Amino Acids

29.66

Weight (kDa)

8.63

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 178	1.8e-52	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	197, 277, 370
AcuI	CTGAAG	1 cut(s)	734
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	8 cut(s)	148, 169, 233, 419, 477, 487, 497, 550
AjnI	CCWGG	3 cut(s)	425, 514, 703
AleI	CACNNNNGTG	1 cut(s)	643
AluBI	AGCT	2 cut(s)	14, 521
AluI	AGCT	2 cut(s)	14, 521
Alw21I	GWGCWC	1 cut(s)	650
Alw44I	GTGCAC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	653
ApaLI	GTGCAC	1 cut(s)	646
ApeKI	GCWGC	2 cut(s)	343, 521
ApoI	RAATTY	3 cut(s)	197, 277, 370
Asp718I	GGTACC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	504, 551
BaeGI	GKGCMC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	355, 508
BciT130I	CCWGG	3 cut(s)	427, 516, 705
BfaI	CTAG	3 cut(s)	8, 410, 651
BisI	GCNGC	3 cut(s)	271, 344, 522
BlsI	GCNGC	3 cut(s)	272, 345, 523
Bme1390I	CCNGG	3 cut(s)	427, 516, 705
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	3 cut(s)	427, 516, 705
BmsI	GCATC	3 cut(s)	185, 193, 385
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	426, 759
Bse1I	ACTGG	2 cut(s)	101, 722
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	427, 516, 705
BseCI	ATCGAT	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	426, 759
BseGI	GGATG	2 cut(s)	49, 82
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	2 cut(s)	101, 722
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	355, 508
BsgI	GTGCAG	2 cut(s)	160, 507
BshFI	GGCC	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	2 cut(s)	430, 434
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	101, 722
BssECI	CCNNGG	2 cut(s)	426, 759
BssMI	GATC	2 cut(s)	430, 434
BssNAI	GTATAC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	759
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	3 cut(s)	427, 516, 705
Bst6I	CTCTTC	1 cut(s)	482
BstC8I	GCNNGC	3 cut(s)	174, 322, 465
BstDEI	CTNAG	3 cut(s)	133, 459, 567
BstF5I	GGATG	2 cut(s)	49, 82
BstKTI	GATC	2 cut(s)	433, 437
BstMBI	GATC	2 cut(s)	430, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 352
BstNI	CCWGG	3 cut(s)	427, 516, 705
BstSCI	CCNGG	3 cut(s)	425, 514, 703
BstSLI	GKGCMC	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	355, 508
BstV2I	GAAGAC	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstZ17I	GTATAC	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	655
BsuTUI	ATCGAT	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	49, 82
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	4 cut(s)	324, 566, 678, 715
Cac8I	GCNNGC	3 cut(s)	174, 322, 465
ClaI	ATCGAT	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	259, 379, 592, 710
CviJI	RGCY	7 cut(s)	5, 14, 467, 521, 627, 655, 665
CviKI_1	RGCY	7 cut(s)	5, 14, 467, 521, 627, 655, 665
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	3 cut(s)	133, 459, 567
DpnI	GATC	2 cut(s)	432, 436
DpnII	GATC	2 cut(s)	430, 434
DraIII	CACNNNGTG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	655
Eco32I	GATATC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	734
EcoRII	CCWGG	3 cut(s)	425, 514, 703
EcoRV	GATATC	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	759
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	4 cut(s)	262, 382, 595, 713
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	4 cut(s)	258, 378, 591, 709
FauNDI	CATATG	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	271, 344, 522
FokI	GGATG	2 cut(s)	56, 89
Fsp4HI	GCNGC	3 cut(s)	271, 344, 522
FspBI	CTAG	3 cut(s)	8, 410, 651
GluI	GCNGC	3 cut(s)	271, 344, 522
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	655
Hin1II	CATG	4 cut(s)	262, 382, 595, 713
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	2 cut(s)	504, 551
Hpy166II	GTNNAC	3 cut(s)	256, 512, 648
Hpy188I	TCNGA	2 cut(s)	367, 753
Hpy188III	TCNNGA	2 cut(s)	120, 612
Hpy8I	GTNNAC	3 cut(s)	256, 512, 648
HpyAV	CCTTC	3 cut(s)	376, 577, 727
HpyCH4V	TGCA	9 cut(s)	56, 141, 206, 343, 502, 524, 638, 648, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 352
HpyF3I	CTNAG	3 cut(s)	133, 459, 567
Hsp92II	CATG	4 cut(s)	262, 382, 595, 713
KpnI	GGTACC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	430, 434
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	2 cut(s)	355, 508
LweI	GCATC	3 cut(s)	185, 193, 385
MaeI	CTAG	3 cut(s)	8, 410, 651
MaeIII	GTNAC	2 cut(s)	211, 539
MalI	GATC	2 cut(s)	432, 436
MboI	GATC	2 cut(s)	430, 434
MboII	GAAGA	4 cut(s)	210, 499, 599, 740
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	29, 197, 277, 370, 420
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	71, 73, 174
Mph1103I	ATGCAT	1 cut(s)	504
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	1 cut(s)	643
MspA1I	CMGCKG	1 cut(s)	270
MspR9I	CCNGG	3 cut(s)	427, 516, 705
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	3 cut(s)	427, 516, 705
MwoI	GCNNNNNNNGC	2 cut(s)	11, 352
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	430, 434
NlaIII	CATG	4 cut(s)	262, 382, 595, 713
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	504
OliI	CACNNNNGTG	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	272, 345, 523
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	425, 514, 703
PspGI	CCWGG	3 cut(s)	425, 514, 703
PspN4I	GGNNCC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	643
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	3 cut(s)	271, 344, 522
Sau3AI	GATC	2 cut(s)	430, 434
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	427, 516, 705
SduI	GDGCHC	1 cut(s)	650
SfaNI	GCATC	3 cut(s)	185, 193, 385
SmiMI	CAYNNNNRTG	1 cut(s)	643
Sse9I	AATT	5 cut(s)	29, 197, 277, 370, 420
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	3 cut(s)	8, 410, 651
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	425, 514, 703
StyI	CCWWGG	1 cut(s)	759
TaqI	TCGA	2 cut(s)	179, 433
TasI	AATT	5 cut(s)	29, 197, 277, 370, 420
TauI	GCSGC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	4 cut(s)	331, 566, 678, 722
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	2 cut(s)	343, 521
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	8 cut(s)	100, 107, 261, 275, 390, 395, 608, 726
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	4 cut(s)	331, 566, 678, 722
VneI	GTGCAC	1 cut(s)	646
XapI	RAATTY	3 cut(s)	197, 277, 370
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	3 cut(s)	8, 410, 651
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.