Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Forward (+)

26099072 .. 26100311

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTTAGTGGCCCATTTTGATATGAAGCTTCACCAAATAGATGTTAAAACAACCTTTTTGAATGGTGAACTAGATGAAGTGATTTATATGAGGCAGCTAGAAGGTTTTGTACAAGCTGGAAGTGAAAACTTAGTGTGCAAGTTAAGAAAATCAATTTATGGCCTAAAACAAGCTTCTAGACGGTGGTACAAGAAATTTGATTATGTGATTTCTACTTTTGGATTTACAGAAAACCTTGTTGATGAGTGTGTTTACTTGAAGACAACCAAAGTGTTAAGTCACATTGTGGCAGGCACACTTGTGATTTATTGTGATAATGAAGCAACTGTTTTCTTTAGCAAGAACAGGAAAAGATCGAATAATTCCAAGCATATTGATTTAAAGTATTACAGTGTTAGAGAAAGGGTAAATCATGGTGAAATAGCTGTTTTAAGCATTGACATGAATTCACGGCTAGCGAGACCCCTTCACCAAGGCCTTGTCGGTAGCAACATTCCGAAGCATACAGCAAGCATTGGAGTTTTAGCTAATCTAGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS RVT_2

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

9.22

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 111	3.7e-22	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	197, 448
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	2 cut(s)	114, 191
AgsI	TTSAA	2 cut(s)	64, 262
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	6 cut(s)	31, 100, 119, 176, 428, 530
AluI	AGCT	6 cut(s)	31, 100, 119, 176, 428, 530
Alw26I	GTCTC	1 cut(s)	457
AoxI	GGCC	3 cut(s)	12, 163, 478
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	197, 448
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	4 cut(s)	26, 80, 431, 464
AsuNHI	GCTAGC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	96, 128
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	5 cut(s)	74, 101, 180, 458, 536
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	529
BmtI	GCTAGC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	3 cut(s)	14, 165, 480
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	14, 165, 480
Bso31I	GGTCTC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	356
BspANI	GGCC	3 cut(s)	14, 165, 480
BspOI	GCTAGC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	186, 331, 395
BstAUI	TGTACA	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	295, 459, 514
BstDEI	CTNAG	2 cut(s)	133, 543
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	14, 165, 480
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	295, 459, 514
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	113, 190
CviAII	CATG	2 cut(s)	416, 445
CviQI	GTAC	2 cut(s)	113, 190
DdeI	CTNAG	2 cut(s)	133, 543
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
DraI	TTTAAA	1 cut(s)	384
DraIII	CACNNNGTG	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	475
Eco147I	AGGCCT	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	2 cut(s)	419, 448
FaiI	YATR	9 cut(s)	26, 90, 92, 162, 207, 375, 417, 446, 507
FatI	CATG	2 cut(s)	415, 444
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	5 cut(s)	74, 101, 180, 458, 536
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	14, 165, 480
Hin1II	CATG	2 cut(s)	419, 448
HindIII	AAGCTT	2 cut(s)	29, 174
HphI	GGTGA	4 cut(s)	26, 80, 431, 464
Hpy166II	GTNNAC	2 cut(s)	71, 256
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	2 cut(s)	180, 536
Hpy8I	GTNNAC	2 cut(s)	71, 256
HpyAV	CCTTC	2 cut(s)	98, 479
HpyCH4III	ACNGT	3 cut(s)	186, 331, 395
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	133, 543
Hsp92II	CATG	2 cut(s)	419, 448
Kzo9I	GATC	1 cut(s)	356
LpnPI	CCDG	3 cut(s)	105, 279, 334
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	5 cut(s)	74, 101, 180, 458, 536
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	1 cut(s)	274
MluCI	AATT	4 cut(s)	156, 197, 364, 448
MnlI	CCTC	1 cut(s)	87
MseI	TTAA	5 cut(s)	48, 146, 278, 383, 434
MslI	CAYNNNNRTG	2 cut(s)	302, 443
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	356
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	419, 448
NmuCI	GTSAC	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	2 cut(s)	114, 191
RsaNI	GTAC	2 cut(s)	113, 190
RseI	CAYNNNNRTG	2 cut(s)	302, 443
SaqAI	TTAA	5 cut(s)	48, 146, 278, 383, 434
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	1 cut(s)	13
SetI	ASST	9 cut(s)	33, 59, 102, 109, 121, 178, 240, 430, 532
SfaNI	GCATC	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	302, 443
Sse9I	AATT	4 cut(s)	156, 197, 364, 448
SseBI	AGGCCT	1 cut(s)	480
SspMI	CTAG	5 cut(s)	74, 101, 180, 458, 536
StuI	AGGCCT	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	186, 331, 395
TaqI	TCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	156, 197, 364, 448
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	5 cut(s)	48, 146, 278, 383, 434
Tru9I	TTAA	5 cut(s)	48, 146, 278, 383, 434
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	41, 93, 336, 461
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	197, 448
XbaI	TCTAGA	2 cut(s)	179, 535
XspI	CTAG	5 cut(s)	74, 101, 180, 458, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.