Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001006

Physical Location & Seq

Genomic Coordinates Reverse (-)

13397875 .. 13398629

Gene Structure 755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTATGCACAAGTATGCACAAGACCGGACTTAGCTTTTGTTGTGGGAGTTCTAGGAAGGTTTCAATCAAATCCTGGTTTGCATCATTGGACTGCAGCTAAAAAGGTTCTGCGTTACTTACAAAGAACCAAGAATTTTATGCTTTGCTATCGTAAGAGTGATGAACTTGAAGTTGTTGGTTACACGGACTCAGACCTAGCTGGCTGCAAGGATGATAGAAGGTCTACATCTGGTTACATATTCTTCTTGGCTGGTGGTGCAATATCTTGGAAAAGTGGAAAACAAACTGTCCGTTCCACTTCCACAATGCAAGCTGAGTTTATCGGATGTTTTGAAGCTACTAAGCAAGCTGTGTGGTTGAGGAACTTTATAGGGCAGATGAGAGTGGTGGATTCTATTTCAAGGCCCTTGAAGATGTTCTGTGACAATGAAGCTGCTGTGTTCTTTTCAAAGAACAATAAAAGGACTTCTGCTTCAAGACTCATGGATGTTAAATATCTAGTTGTGAGGGACAAGGTCAAAGACAAAGAAATCACCATTGAGTACATTTCTTCAAAGTCAAACATTGCTGATCCTCTTACCAAGAGTTTACCAGTGGGAGTGTTTCAAAATCATGTTGCTAATATGGGAATACTCGAGTCTTTTGATGCAGCAGATCAGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

222

Amino Acids

25.11

Weight (kDa)

9.27

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001006)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28582 FvH4_4g04791 FvH4_5g37183 FvH4_6g21376 FvH4_7g12362
malus_domestica	MD04G1043200.v1.1 MD08G1171400.v1.1 MD16G1163300.v1.1
pyrus_communis	pycom01g08240 pycom02g13280 pycom02g13290 pycom03g16600 pycom04g18500 pycom06g06360 pycom12g01620 pycom15g38160
rosa_chinensis	RchiOBHm_Chr1g0317711 RchiOBHm_Chr1g0337471 RchiOBHm_Chr1g0365501 RchiOBHm_Chr1g0375591 RchiOBHm_Chr1g0383411 RchiOBHm_Chr2g0115341 RchiOBHm_Chr2g0144381 RchiOBHm_Chr2g0150761 RchiOBHm_Chr2g0159601 RchiOBHm_Chr3g0453781 RchiOBHm_Chr3g0467131 RchiOBHm_Chr3g0491311 RchiOBHm_Chr3g0495711 RchiOBHm_Chr4g0385651 RchiOBHm_Chr4g0390931 RchiOBHm_Chr4g0441701 RchiOBHm_Chr5g0040291 RchiOBHm_Chr5g0040891 RchiOBHm_Chr5g0066231 RchiOBHm_Chr5g0076641 RchiOBHm_Chr6g0259091 RchiOBHm_Chr6g0300011 RchiOBHm_Chr6g0304531 RchiOBHm_Chr7g0192701 RchiOBHm_Chr7g0194431
rosa_roxburghii	Rroxscaffold_2G00112920 Rroxscaffold_3G00225970 Rroxscaffold_3G00227430 Rroxscaffold_4G00301360 Rroxscaffold_4G00305440 Rroxscaffold_5G00386330
rosa_wichuraiana	Rw0G010510 Rw1G007900 Rw1G018220 Rw1G022080 Rw2G040570 Rw2G046740 Rw4G002540 Rw5G013410 Rw5G017210 Rw5G017940 Rw7G005960 Rw7G007520 Rw7G012200 Rw7G030860 Rw7G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	1 cut(s)	545
AgsI	TTSAA	9 cut(s)	65, 170, 335, 402, 412, 450, 477, 555, 608
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	7 cut(s)	35, 98, 200, 314, 338, 350, 434
AluI	AGCT	7 cut(s)	35, 98, 200, 314, 338, 350, 434
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	4 cut(s)	95, 204, 434, 650
ApoI	RAATTY	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	107, 191, 421, 662
BciT130I	CCWGG	1 cut(s)	75
BfaI	CTAG	3 cut(s)	53, 197, 500
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	4 cut(s)	96, 205, 435, 651
BlsI	GCNGC	4 cut(s)	97, 206, 436, 652
Bme1390I	CCNGG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	91, 637
BsaWI	WCCGGW	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	217, 332, 493
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	204, 306
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	107, 191, 421, 662
BshFI	GGCC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	406
BsoBI	CYCGRG	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	571, 655
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	2 cut(s)	203, 307
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	593
BssMI	GATC	2 cut(s)	571, 655
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	289
BstC8I	GCNNGC	3 cut(s)	202, 312, 348
BstDEI	CTNAG	4 cut(s)	31, 190, 315, 342
BstF5I	GGATG	3 cut(s)	217, 332, 493
BstKTI	GATC	2 cut(s)	574, 658
BstMBI	GATC	2 cut(s)	571, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	107, 191, 421, 662
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	217, 332, 493
BtsIMutI	CAGTG	2 cut(s)	600, 665
Cac8I	GCNNGC	3 cut(s)	202, 312, 348
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	544
CspCI	CAANNNNNGTGG	2 cut(s)	335, 370
CviAII	CATG	2 cut(s)	484, 614
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	4 cut(s)	31, 190, 315, 342
DpnI	GATC	2 cut(s)	573, 657
DpnII	GATC	2 cut(s)	571, 655
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	2 cut(s)	487, 617
FaiI	YATR	8 cut(s)	6, 16, 140, 239, 371, 485, 615, 626
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	2 cut(s)	483, 613
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	96, 205, 435, 651
FokI	GGATG	3 cut(s)	224, 339, 500
Fsp4HI	GCNGC	4 cut(s)	96, 205, 435, 651
FspBI	CTAG	3 cut(s)	53, 197, 500
GluI	GCNGC	4 cut(s)	96, 205, 435, 651
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	487, 617
HinfI	GANTC	4 cut(s)	188, 392, 480, 638
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	2 cut(s)	225, 590
Hpy188I	TCNGA	2 cut(s)	193, 326
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	2 cut(s)	225, 590
HpyAV	CCTTC	2 cut(s)	51, 213
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	8 cut(s)	8, 18, 82, 95, 207, 260, 310, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	4 cut(s)	31, 190, 315, 342
Hsp92II	CATG	2 cut(s)	487, 617
Kzo9I	GATC	2 cut(s)	571, 655
LpnPI	CCDG	7 cut(s)	39, 60, 87, 186, 216, 237, 606
Lsp1109I	GCAGC	4 cut(s)	107, 191, 421, 662
LweI	GCATC	2 cut(s)	91, 637
MaeI	CTAG	3 cut(s)	53, 197, 500
MaeIII	GTNAC	4 cut(s)	113, 179, 233, 422
MalI	GATC	2 cut(s)	573, 657
MboI	GATC	2 cut(s)	571, 655
MboII	GAAGA	3 cut(s)	235, 424, 543
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	3 cut(s)	182, 474, 647
MnlI	CCTC	3 cut(s)	354, 501, 585
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	13
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	2 cut(s)	571, 655
NlaIII	CATG	2 cut(s)	487, 617
NmuCI	GTSAC	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	4 cut(s)	97, 206, 436, 652
PleI	GAGTC	3 cut(s)	182, 474, 646
PpsI	GAGTC	3 cut(s)	182, 474, 646
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	4 cut(s)	96, 205, 435, 651
Sau3AI	GATC	2 cut(s)	571, 655
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	3 cut(s)	182, 474, 647
ScrFI	CCNGG	1 cut(s)	75
SfaNI	GCATC	2 cut(s)	91, 637
SfcI	CTRYAG	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	635
SlaI	CTCGAG	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	1 cut(s)	133
SspMI	CTAG	3 cut(s)	53, 197, 500
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	636
TasI	AATT	1 cut(s)	133
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	2 cut(s)	600, 665
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	4 cut(s)	95, 204, 434, 650
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	177, 444
TspGWI	ACGGA	2 cut(s)	200, 281
TspRI	CASTG	2 cut(s)	600, 665
Tth111I	GACNNNGTC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	53, 197, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.