FvH4_4g04720

3-isopropylmalate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
4099848 .. 4110566
10719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04720.t3

Sequence Viewer

Length: 1524 bp
ATGTCTTACTCCACTCTTGCTTCACCCTCCACTTCCTTCCTCAACGACACCACCACCACTAAGAAGGATTTGGGTCTCTCTGCTTTTTCTTCCACATTTCAGCGATGCAGGAGATCAGTCTCCAAGAAATCCTGCTCCGTCATGGCCCCATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACTGGAATGACAATGACCGAGAAGATATTGGCAAGGGCTTCTGAGAGAACCCATTTGAGCCCTGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGATGTGTGTGGCCCTGGTTCGTTTGGAATCTTCAAGAAAGAGTTTGGCCAGAATGCTAAGGTTTGGGACCGAGAAAAGATTGTGATCATACCTGACCATTATATATTCACTACTGATGAGCGTGCAAACCGTAATGTGGATATATTGAGGGATTTCTGCACGGAGCAGAACATTAAGTACTTTTATGATATCAAGGATCTTGGCAACTTTAAGGCTAACCCGGATTACAAGGGGGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTGCTACTAGGTACAGATTCTCACACCTGTACCGCCGGAGCATTTGGACAATTCGCTACTGGAATCGGGAACACTGATGCAGGTTTCGTATTGGGCACTGGCAAGCTTTTACTCAAGGTGCCTCCAACTCTGAGATTCGTGCTGGATGGTGAAATGCCTGACTATTTGCTTGCCAAAGACTTAATTTTGCAAATTATTGGTGAAATCTCTGTAGCCGGTGCAACATATAAAGCTATGGAGTTTGTTGGCAGCACTGTTGAAAGCTTAAGTATGGAAGAGAGGATGACATTATGCAACATGGTTGTTGAAGCTGGGGGTAAAAATGGTATCGTCCCTGCTGATAGCACTACATACAAGTACCTTGAGGATAAAACGTCAGTACCGTATGAACCTGTGTACAGCGATGATAAAGCAAGATTTCTTACTGAGTACAGATTTGATATCTCAAAATTGGAGCCGTTGGTGGCAAAGCCTCATTCTCCAGATAACCGTGCTTTAGCAAGAGAATGCAAAGATGTGAAAATTGACAGAGTGTATATTGGATCTTGTACTGGTGGGAAAACAGAGGATTTTATGGCTGCTGCTAAAGTTTTTCTGGCTTCAGGCAAGAAGGTCAAAGTACCCACTTTTCTTGTACCTGCTACACAAAAGGTTTGGATGGACGTGTACAGCCGTCCGGTGCCAGGATCTGGTGGAAAGACTTGCTCACAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAGTCCCAGTTGTGGTGCTTGCTTGGGTGGTCCCAAGGACACATATGCTCGCTTGAATGAACCGCAGGTATGTGTCTCTACTACAAACAGAAACTTCCCAGGCAGAATGGGCCACAAGGAAGGCCAGATATATCTTGCTTCACCATATACAGCTGCAGCATCAGCCTTGACCGGTTATGTGACCGACCCAAGAGAGTTTTTGCAGTAA

Protein Analysis

508

Amino Acids

55.32

Weight (kDa)

7.45

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aconitase PF00330 83 - 356 2.4e-56 Aconitase family (aconitate hydratase)
Aconitase PF00330 360 - 497 9.9e-26 Aconitase family (aconitate hydratase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1321
Acc36I ACCTGC 4 cut(s) 644, 1219, 1321, 1372
AccB1I GGYRCC 2 cut(s) 691, 1252
AccB7I CCANNNNNTGG 1 cut(s) 1262
AccBSI CCGCTC 1 cut(s) 157
AciI CCGC 3 cut(s) 157, 606, 1379
AclWI GGATC 3 cut(s) 495, 1123, 1267
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 1158
AfiI CCNNNNNNNGG 4 cut(s) 427, 1256, 1262, 1328
AflII CTTAAG 1 cut(s) 838
AflIII ACRYGT 1 cut(s) 1236
AgeI ACCGGT 1 cut(s) 1487
AgsI TTSAA 4 cut(s) 325, 833, 881, 1372
AjiI CACGTC 1 cut(s) 1237
AjnI CCWGG 5 cut(s) 247, 304, 565, 1255, 1414
AluBI AGCT 6 cut(s) 679, 806, 837, 884, 1298, 1469
AluI AGCT 6 cut(s) 679, 806, 837, 884, 1298, 1469
Alw26I GTCTC 3 cut(s) 80, 124, 1396
AlwI GGATC 3 cut(s) 495, 1123, 1267
AlwNI CAGNNNCTG 1 cut(s) 1262
AoxI GGCC 6 cut(s) 144, 301, 337, 563, 1426, 1438
ApeKI GCWGC 5 cut(s) 822, 1151, 1154, 1469, 1472
AsiGI ACCGGT 1 cut(s) 1487
AspS9I GGNCC 5 cut(s) 145, 302, 358, 1346, 1426
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 5 cut(s) 15, 263, 734, 785, 1449
AvaII GGWCC 2 cut(s) 358, 1346
BaeGI GKGCMC 1 cut(s) 671
BaeI ACNNNNGTAYC 4 cut(s) 586, 619, 936, 969
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 2 cut(s) 691, 1252
BanII GRGCYC 1 cut(s) 248
BbvI GCAGC 5 cut(s) 834, 1138, 1141, 1456, 1484
BccI CCATC 3 cut(s) 157, 713, 1225
BceAI ACGGC 2 cut(s) 1015, 1230
BciT130I CCWGG 5 cut(s) 249, 306, 567, 1257, 1416
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 3 cut(s) 80, 124, 1396
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 2 cut(s) 783, 1470
BfrI CTTAAG 1 cut(s) 838
BfuAI ACCTGC 4 cut(s) 644, 1219, 1321, 1372
BisI GCNGC 5 cut(s) 823, 1152, 1155, 1470, 1473
BlsI GCNGC 5 cut(s) 824, 1153, 1156, 1471, 1474
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 6 cut(s) 249, 306, 512, 567, 1257, 1416
Bme18I GGWCC 2 cut(s) 358, 1346
BmgBI CACGTC 1 cut(s) 1237
BmgT120I GGNCC 5 cut(s) 145, 302, 358, 1346, 1426
BmiI GGNNCC 6 cut(s) 147, 359, 693, 1029, 1254, 1348
BmrFI CCNGG 6 cut(s) 249, 306, 512, 567, 1257, 1416
BmrI ACTGGG 1 cut(s) 1317
BmsI GCATC 3 cut(s) 95, 640, 1484
BmuI ACTGGG 1 cut(s) 1317
BpmI CTGGAG 2 cut(s) 588, 1038
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 3 cut(s) 531, 671, 956
BpuMI CCSGG 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 247, 304, 1350, 1414
BsaWI WCCGGW 2 cut(s) 1249, 1487
Bsc4I CCNNNNNNNGG 4 cut(s) 427, 1256, 1262, 1328
Bse118I RCCGGY 2 cut(s) 788, 1487
Bse1I ACTGG 6 cut(s) 178, 193, 637, 676, 1129, 1323
Bse3DI GCAATG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 5 cut(s) 249, 306, 567, 1257, 1416
BseDI CCNNGG 4 cut(s) 247, 304, 1350, 1414
BseGI GGATG 3 cut(s) 724, 861, 1236
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 4 cut(s) 427, 1256, 1262, 1328
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 3 cut(s) 219, 695, 990
BseNI ACTGG 6 cut(s) 178, 193, 637, 676, 1129, 1323
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 5 cut(s) 834, 1138, 1141, 1456, 1484
BseYI CCCAGC 1 cut(s) 884
BsgI GTGCAG 1 cut(s) 433
BshFI GGCC 6 cut(s) 146, 303, 339, 565, 1428, 1440
BshNI GGYRCC 2 cut(s) 691, 1252
BshTI ACCGGT 1 cut(s) 1487
BsiSI CCGG 5 cut(s) 512, 609, 789, 1250, 1488
BslFI GGGAC 4 cut(s) 371, 890, 1305, 1332
BslI CCNNNNNNNGG 4 cut(s) 427, 1256, 1262, 1328
BsmAI GTCTC 3 cut(s) 80, 124, 1396
BsmFI GGGAC 4 cut(s) 371, 890, 1305, 1332
BsmI GAATGC 2 cut(s) 349, 1085
BsnI GGCC 6 cut(s) 146, 303, 339, 565, 1428, 1440
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 248, 671
Bsp1407I TGTACA 2 cut(s) 969, 1239
Bsp143I GATC 5 cut(s) 113, 375, 487, 1115, 1259
BspACI CCGC 3 cut(s) 157, 606, 1379
BspANI GGCC 6 cut(s) 146, 303, 339, 565, 1428, 1440
BspCNI CTCAG 3 cut(s) 220, 696, 991
BspLI GGNNCC 6 cut(s) 147, 359, 693, 1029, 1254, 1348
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 4 cut(s) 644, 1219, 1321, 1372
BspPI GGATC 3 cut(s) 495, 1123, 1267
BspT107I GGYRCC 2 cut(s) 691, 1252
BspTI CTTAAG 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 556
BsrFI RCCGGY 2 cut(s) 788, 1487
BsrGI TGTACA 2 cut(s) 969, 1239
BsrI ACTGG 6 cut(s) 178, 193, 637, 676, 1129, 1323
BssAI RCCGGY 2 cut(s) 788, 1487
BssECI CCNNGG 4 cut(s) 247, 304, 1350, 1414
BssMI GATC 5 cut(s) 113, 375, 487, 1115, 1259
BssT1I CCWWGG 1 cut(s) 1350
Bst2UI CCWGG 5 cut(s) 249, 306, 567, 1257, 1416
Bst4CI ACNGT 4 cut(s) 422, 829, 957, 1064
Bst6I CTCTTC 1 cut(s) 843
BstAFI CTTAAG 1 cut(s) 838
BstAUI TGTACA 2 cut(s) 969, 1239
BstC8I GCNNGC 7 cut(s) 165, 414, 563, 677, 744, 1336, 1366
BstDEI CTNAG 5 cut(s) 60, 228, 348, 704, 999
BstF5I GGATG 3 cut(s) 724, 861, 1236
BstKTI GATC 5 cut(s) 116, 378, 490, 1118, 1262
BstMAI GTCTC 3 cut(s) 80, 124, 1396
BstMBI GATC 5 cut(s) 113, 375, 487, 1115, 1259
BstMWI GCNNNNNNNGC 2 cut(s) 1425, 1478
BstNI CCWGG 5 cut(s) 249, 306, 567, 1257, 1416
BstSCI CCNGG 6 cut(s) 247, 304, 510, 565, 1255, 1414
BstSFI CTRYAG 2 cut(s) 783, 1470
BstSLI GKGCMC 1 cut(s) 671
BstV1I GCAGC 5 cut(s) 834, 1138, 1141, 1456, 1484
BstX2I RGATCY 3 cut(s) 487, 1115, 1259
BstYI RGATCY 3 cut(s) 487, 1115, 1259
BsuRI GGCC 6 cut(s) 146, 303, 339, 565, 1428, 1440
BtgZI GCGATG 2 cut(s) 118, 990
BtrI CACGTC 1 cut(s) 1237
BtsCI GGATG 3 cut(s) 724, 861, 1236
BtsIMutI CAGTG 3 cut(s) 645, 669, 825
BveI ACCTGC 4 cut(s) 644, 1219, 1321, 1372
Cac8I GCNNGC 7 cut(s) 165, 414, 563, 677, 744, 1336, 1366
CaiI CAGNNNCTG 1 cut(s) 1262
Cfr10I RCCGGY 2 cut(s) 788, 1487
Cfr13I GGNCC 5 cut(s) 145, 302, 358, 1346, 1426
CspAI ACCGGT 1 cut(s) 1487
CspCI CAANNNNNGTGG 2 cut(s) 1186, 1221
CviAII CATG 4 cut(s) 142, 290, 533, 871
DdeI CTNAG 5 cut(s) 60, 228, 348, 704, 999
DpnI GATC 5 cut(s) 115, 377, 489, 1117, 1261
DpnII GATC 5 cut(s) 113, 375, 487, 1115, 1259
EaeI YGGCCR 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 1350
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 2 cut(s) 481, 1015
Eco47I GGWCC 2 cut(s) 358, 1346
Eco57I CTGAAG 1 cut(s) 1158
EcoRII CCWGG 5 cut(s) 247, 304, 565, 1255, 1414
EcoRV GATATC 2 cut(s) 481, 1015
EcoT14I CCWWGG 1 cut(s) 1350
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 1350
FaeI CATG 4 cut(s) 145, 293, 536, 874
FaqI GGGAC 4 cut(s) 371, 890, 1305, 1332
FatI CATG 4 cut(s) 141, 289, 532, 870
FauNDI CATATG 1 cut(s) 1360
FbaI TGATCA 1 cut(s) 375
Fnu4HI GCNGC 5 cut(s) 823, 1152, 1155, 1470, 1473
FokI GGATG 3 cut(s) 731, 868, 1243
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 5 cut(s) 823, 1152, 1155, 1470, 1473
FspBI CTAG 1 cut(s) 581
GluI GCNGC 5 cut(s) 823, 1152, 1155, 1470, 1473
GsaI CCCAGC 1 cut(s) 888
GsuI CTGGAG 2 cut(s) 588, 1038
HaeIII GGCC 6 cut(s) 146, 303, 339, 565, 1428, 1440
HapII CCGG 5 cut(s) 512, 609, 789, 1250, 1488
Hin1II CATG 4 cut(s) 145, 293, 536, 874
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 677, 835
HinfI GANTC 4 cut(s) 318, 590, 636, 708
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 5 cut(s) 512, 609, 789, 1250, 1488
HphI GGTGA 5 cut(s) 15, 263, 734, 785, 1449
Hpy166II GTNNAC 3 cut(s) 268, 970, 1240
Hpy188I TCNGA 3 cut(s) 154, 229, 705
Hpy188III TCNNGA 5 cut(s) 184, 325, 548, 640, 1055
Hpy8I GTNNAC 3 cut(s) 268, 970, 1240
HpyAV CCTTC 5 cut(s) 46, 58, 545, 1177, 1430
HpyCH4III ACNGT 4 cut(s) 422, 829, 957, 1064
HpyCH4IV ACGT 2 cut(s) 947, 1236
HpyF10VI GCNNNNNNNGC 2 cut(s) 1425, 1478
HpyF3I CTNAG 5 cut(s) 60, 228, 348, 704, 999
HpySE526I ACGT 2 cut(s) 947, 1236
Hsp92II CATG 4 cut(s) 145, 293, 536, 874
Ksp22I TGATCA 1 cut(s) 375
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 5 cut(s) 113, 375, 487, 1115, 1259
LmnI GCTCC 5 cut(s) 140, 154, 454, 611, 1027
Lsp1109I GCAGC 5 cut(s) 834, 1138, 1141, 1456, 1484
LweI GCATC 3 cut(s) 95, 640, 1484
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 947, 1236
MaeIII GTNAC 3 cut(s) 251, 1304, 1495
MalI GATC 5 cut(s) 115, 377, 489, 1117, 1261
MbiI CCGCTC 1 cut(s) 157
MboI GATC 5 cut(s) 113, 375, 487, 1115, 1259
MboII GAAGA 4 cut(s) 81, 220, 313, 860
MflI RGATCY 3 cut(s) 487, 1115, 1259
MhlI GDGCHC 2 cut(s) 248, 671
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 5 cut(s) 623, 756, 765, 1022, 1095
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 722
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 5 cut(s) 267, 465, 501, 755, 839
Msp20I TGGCCA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 1469
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 5 cut(s) 512, 609, 789, 1250, 1488
MspR9I CCNGG 6 cut(s) 249, 306, 512, 567, 1257, 1416
Mva1269I GAATGC 2 cut(s) 349, 1085
MvaI CCWGG 5 cut(s) 249, 306, 567, 1257, 1416
MwoI GCNNNNNNNGC 2 cut(s) 1425, 1478
NciI CCSGG 1 cut(s) 512
NdeI CATATG 1 cut(s) 1360
NdeII GATC 5 cut(s) 113, 375, 487, 1115, 1259
NlaIII CATG 4 cut(s) 145, 293, 536, 874
NlaIV GGNNCC 6 cut(s) 147, 359, 693, 1029, 1254, 1348
NmuCI GTSAC 3 cut(s) 251, 1304, 1495
PaqCI CACCTGC 1 cut(s) 1321
PceI AGGCCT 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 953
PctI GAATGC 2 cut(s) 349, 1085
PfeI GAWTC 4 cut(s) 318, 590, 636, 708
PflMI CCANNNNNTGG 1 cut(s) 1262
PinAI ACCGGT 1 cut(s) 1487
PkrI GCNGC 5 cut(s) 824, 1153, 1156, 1471, 1474
Psp6I CCWGG 5 cut(s) 247, 304, 565, 1255, 1414
PspFI CCCAGC 1 cut(s) 884
PspGI CCWGG 5 cut(s) 247, 304, 565, 1255, 1414
PspN4I GGNNCC 6 cut(s) 147, 359, 693, 1029, 1254, 1348
PspPI GGNCC 5 cut(s) 145, 302, 358, 1346, 1426
PsrI GAACNNNNNNTAC 2 cut(s) 452, 484
PstI CTGCAG 1 cut(s) 1474
PstNI CAGNNNCTG 1 cut(s) 1262
PsuI RGATCY 3 cut(s) 487, 1115, 1259
PvuII CAGCTG 1 cut(s) 1469
SaqAI TTAA 5 cut(s) 267, 465, 501, 755, 839
SatI GCNGC 5 cut(s) 823, 1152, 1155, 1470, 1473
Sau3AI GATC 5 cut(s) 113, 375, 487, 1115, 1259
Sau96I GGNCC 5 cut(s) 145, 302, 358, 1346, 1426
ScaI AGTACT 1 cut(s) 470
ScrFI CCNGG 6 cut(s) 249, 306, 512, 567, 1257, 1416
SduI GDGCHC 2 cut(s) 248, 671
SfaNI GCATC 3 cut(s) 95, 640, 1484
SfcI CTRYAG 2 cut(s) 783, 1470
SinI GGWCC 2 cut(s) 358, 1346
SmlI CTYRAG 4 cut(s) 546, 686, 838, 935
SmoI CTYRAG 4 cut(s) 546, 686, 838, 935
Sse9I AATT 5 cut(s) 623, 756, 765, 1022, 1095
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 3 cut(s) 157, 606, 1379
SspMI CTAG 1 cut(s) 581
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 6 cut(s) 247, 304, 510, 565, 1255, 1414
StyI CCWWGG 1 cut(s) 1350
TaaI ACNGT 4 cut(s) 422, 829, 957, 1064
TaiI ACGT 2 cut(s) 950, 1239
TaqII GACCGA 4 cut(s) 169, 218, 375, 1514
TasI AATT 5 cut(s) 623, 756, 765, 1022, 1095
TatI WGTACW 5 cut(s) 468, 969, 1002, 1121, 1239
TfiI GAWTC 4 cut(s) 318, 590, 636, 708
Tru1I TTAA 5 cut(s) 267, 465, 501, 755, 839
Tru9I TTAA 5 cut(s) 267, 465, 501, 755, 839
TscAI CASTG 3 cut(s) 652, 676, 832
TseFI GTSAC 3 cut(s) 251, 1304, 1495
TseI GCWGC 5 cut(s) 822, 1151, 1154, 1469, 1472
Tsp45I GTSAC 3 cut(s) 251, 1304, 1495
TspDTI ATGAA 2 cut(s) 975, 1389
TspGWI ACGGA 2 cut(s) 127, 467
TspRI CASTG 3 cut(s) 652, 676, 832
Van91I CCANNNNNTGG 1 cut(s) 1262
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 2 cut(s) 358, 1346
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 296
XspI CTAG 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.