Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008351.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

17862 .. 18698

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008351.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcttactccactgttgctccatccttcatctccttcatcaacaaaaacaccaagaaggatttggatctctctgctttctcttccacatcgccggcttcattacagggatgcaagggatcggtctccaagaaaatctgctctgtcatggcgccacagcaatcggagcggaagccagccactactggctcggtcaagacgggaatgacgatgaccgagaaaatattggctagggcttctgagaaaacccatttgagcccaggtgacaatgtttgggttaacattgatgttctgatgacccatgatgtctgtggccctggttcctttggaatcttcaagaaagagtttggccagaatgctaaggtttgggatcgagaaaagattgtagtcatacctgaccattatatattcactactgatgagcgtgcaaaccgtaatgtggataccttgagggatttctgcacggagcagaacatcaagtacttctatgatatcaaggatcttggtaactttcaggtgtggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

175

Amino Acids

19.57

Weight (kDa)

8.63

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	4 cut(s)	75, 127, 378, 507
AcoI	YGGCCR	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	259, 316
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	4 cut(s)	75, 127, 378, 507
AoxI	GGCC	2 cut(s)	313, 349
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	275
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	260
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	261, 318
BciVI	GTATCC	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	436
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	2 cut(s)	261, 318
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	153, 322
BmrFI	CCNGG	2 cut(s)	261, 318
BmsI	GCATC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	259, 316
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	261, 318
BseDI	CCNNGG	2 cut(s)	259, 316
BseGI	GGATG	2 cut(s)	23, 116
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	315, 351
BshNI	GGYRCC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	315, 351
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	67, 119, 370, 499
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	315, 351
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	153, 322
BspPI	GGATC	4 cut(s)	75, 127, 378, 507
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	259, 316
BssMI	GATC	4 cut(s)	67, 119, 370, 499
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	261, 318
Bst4CI	ACNGT	2 cut(s)	16, 434
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	96, 177, 426
BstDEI	CTNAG	2 cut(s)	240, 360
BstF5I	GGATG	2 cut(s)	23, 116
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	70, 122, 373, 502
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	67, 119, 370, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	261, 318
BstSCI	CCNGG	2 cut(s)	259, 316
BstX2I	RGATCY	2 cut(s)	67, 499
BstYI	RGATCY	2 cut(s)	67, 499
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	315, 351
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	23, 116
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	3 cut(s)	96, 177, 426
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	2 cut(s)	148, 302
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	240, 360
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	4 cut(s)	69, 121, 372, 501
DpnII	GATC	4 cut(s)	67, 119, 370, 499
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	259, 316
EcoRV	GATATC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
FaeI	CATG	2 cut(s)	151, 305
FaiI	YATR	6 cut(s)	149, 303, 392, 405, 407, 489
FatI	CATG	2 cut(s)	147, 301
FokI	GGATG	2 cut(s)	10, 123
FriOI	GRGCYC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	315, 351
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	151, 305
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	330
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	166, 241, 294
Hpy188III	TCNNGA	3 cut(s)	196, 337, 374
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	37, 46, 52
HpyCH4III	ACNGT	2 cut(s)	16, 434
HpyCH4V	TGCA	3 cut(s)	114, 428, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	240, 360
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	151, 305
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	67, 119, 370, 499
LmnI	GCTCC	3 cut(s)	25, 166, 466
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	263, 506
MalI	GATC	4 cut(s)	69, 121, 372, 501
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	4 cut(s)	67, 119, 370, 499
MboII	GAAGA	2 cut(s)	75, 325
MflI	RGATCY	2 cut(s)	67, 499
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	351
Mly113I	GGCGCC	1 cut(s)	152
MnlI	CCTC	1 cut(s)	444
Mox20I	TGGCCA	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	261, 318
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	261, 318
MwoI	GCNNNNNNNGC	1 cut(s)	166
NaeI	GCCGGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	152
NdeII	GATC	4 cut(s)	67, 119, 370, 499
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	151, 305
NlaIV	GGNNCC	2 cut(s)	153, 322
NmuCI	GTSAC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	330
PluTI	GGCGCC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	259, 316
PspGI	CCWGG	2 cut(s)	259, 316
PspN4I	GGNNCC	2 cut(s)	153, 322
PspPI	GGNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PsuI	RGATCY	2 cut(s)	67, 499
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	67, 119, 370, 499
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	261, 318
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	5 cut(s)	265, 366, 397, 449, 519
SfaNI	GCATC	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SsiI	CCGC	1 cut(s)	169
SspDI	GGCGCC	1 cut(s)	151
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	259, 316
TaaI	ACNGT	2 cut(s)	16, 434
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	3 cut(s)	112, 181, 230
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	19, 28, 90
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 308
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.