Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

3903348 .. 3905422

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0023800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTTTAAAGGCCAATAAGACTCATAACCTGTTGAGTCGAACTGTTGGTACAACCTTTGTGGAGAAAATGGATGGGGATTTGTTTGGTCAACATGGGAGAAGCAGTCAAGACCCACTAAAAAAATTGACCAAGTCACCAGTGCTGGATGGCTATGCTGATGAGGGACCCCATGAGGAACTCATACATGATGAGGTCATAAACATATCTGCGGCGTATTTGAATGAGCCGGAGTCAGAACATTGGTTTCTCCCTTCCTTTTTTGGGGAACGAGCGAGGGTAAAAGATGAAGCATGTAGCTATGCTAAGTGGCTCACATCAACCATTGAGATGTGTGGTCTTAAGAGGTTTCATCGCCGTCTCCACCAATGCTCCAAGATATTCATTCCCTTGCACGACAATATGGAAGAGCACTGGATTCTGTTGGTCATGCACCTCCCTGAAAAAAAGGCAGAGGTGCTGGACAACTTCCCTGATGTAAGGTCACGTGAGAGGCGAATGGATCATGCAAGAGACGTGATGGCAATGTTGCAGAAGTTTCATTCGGAGGACCAGCGTACTCGATTGGCACTTGAAATTGTTCTTCATCCAAGGAATGAACACCGTCAAATATTGATTAGAGTAGCAGCAGGAGCTTCGATGCTGCCAATAGGTGAAAGTGAGCTATTCAAAAATATTCCTCTTCCACCAACCGAAAGAAAGTTTCGTAGCCACCATAAGCGGCGAGATCATGTGTCGAAGGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

249

Amino Acids

29.02

Weight (kDa)

7.86

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	119 - 177	6.5e-06	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	747
AciI	CCGC	2 cut(s)	212, 721
AclWI	GGATC	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	2 cut(s)	52, 559
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	223, 575, 670
AjiI	CACGTC	1 cut(s)	517
AluBI	AGCT	3 cut(s)	300, 635, 664
AluI	AGCT	3 cut(s)	300, 635, 664
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	365, 507
AlwI	GGATC	1 cut(s)	510
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	626, 643
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	167, 550
AsuHPI	GGTGA	2 cut(s)	129, 665
AvaII	GGWCC	2 cut(s)	167, 550
BbrPI	CACGTG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	630, 638
BccI	CCATC	3 cut(s)	68, 143, 514
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	618, 652
BcoDI	GTCTC	2 cut(s)	365, 507
BfaI	CTAG	1 cut(s)	748
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	4 cut(s)	213, 627, 644, 722
BlsI	GCNGC	4 cut(s)	214, 628, 645, 723
Bme18I	GGWCC	2 cut(s)	167, 550
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	167, 550
BmiI	GGNNCC	2 cut(s)	168, 169
BmsI	GCATC	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	1 cut(s)	590
BsaXI	ACNNNNNCTCC	4 cut(s)	91, 121, 356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	140, 419
Bse3DI	GCAATG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	590
BseGI	GGATG	3 cut(s)	79, 154, 586
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	140, 419
BseXI	GCAGC	2 cut(s)	630, 638
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	2 cut(s)	365, 507
BsmBI	CGTCTC	2 cut(s)	365, 507
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	502, 727
BspACI	CCGC	2 cut(s)	212, 721
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	168, 169
BspPI	GGATC	1 cut(s)	510
BspQI	GCTCTTC	1 cut(s)	402
BspTI	CTTAAG	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	140, 419
BssECI	CCNNGG	1 cut(s)	590
BssMI	GATC	2 cut(s)	502, 727
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	46, 605
Bst6I	CTCTTC	2 cut(s)	402, 687
BstACI	GRCGYC	1 cut(s)	744
BstAFI	CTTAAG	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	79, 154, 586
BstKTI	GATC	2 cut(s)	505, 730
BstMAI	GTCTC	2 cut(s)	365, 507
BstMBI	GATC	2 cut(s)	502, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstNSI	RCATGY	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	630, 638
BsuRI	GGCC	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	338
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	79, 154, 586
BtsIMutI	CAGTG	2 cut(s)	147, 412
Cfr13I	GGNCC	2 cut(s)	167, 550
Csp6I	GTAC	2 cut(s)	51, 558
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	7 cut(s)	95, 173, 188, 294, 430, 506, 731
CviJI	RGCY	8 cut(s)	14, 153, 229, 300, 313, 635, 664, 711
CviKI_1	RGCY	8 cut(s)	14, 153, 229, 300, 313, 635, 664, 711
CviQI	GTAC	2 cut(s)	51, 558
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	504, 729
DpnII	GATC	2 cut(s)	502, 727
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	402, 687
EarI	CTCTTC	2 cut(s)	402, 687
Eco130I	CCWWGG	1 cut(s)	590
Eco47I	GGWCC	2 cut(s)	167, 550
Eco72I	CACGTG	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	590
Esp3I	CGTCTC	2 cut(s)	365, 507
FaeI	CATG	7 cut(s)	98, 176, 191, 297, 433, 509, 734
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	7 cut(s)	94, 172, 187, 293, 429, 505, 730
Fnu4HI	GCNGC	4 cut(s)	213, 627, 644, 722
FokI	GGATG	3 cut(s)	86, 161, 573
Fsp4HI	GCNGC	4 cut(s)	213, 627, 644, 722
FspBI	CTAG	1 cut(s)	748
GluI	GCNGC	4 cut(s)	213, 627, 644, 722
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	7 cut(s)	98, 176, 191, 297, 433, 509, 734
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HinfI	GANTC	4 cut(s)	22, 37, 233, 418
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	129, 665
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	238, 547
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	264, 733
HpyCH4III	ACNGT	2 cut(s)	46, 605
HpyCH4IV	ACGT	3 cut(s)	487, 516, 744
HpyCH4V	TGCA	4 cut(s)	394, 433, 509, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	3 cut(s)	487, 516, 744
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	7 cut(s)	98, 176, 191, 297, 433, 509, 734
KflI	GGGWCCC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	502, 727
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	377, 632
Lsp1109I	GCAGC	2 cut(s)	630, 638
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	1 cut(s)	748
MaeII	ACGT	3 cut(s)	487, 516, 744
MaeIII	GTNAC	2 cut(s)	135, 483
MalI	GATC	2 cut(s)	504, 729
MboI	GATC	2 cut(s)	502, 727
MboII	GAAGA	3 cut(s)	419, 575, 674
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	2 cut(s)	125, 576
MlyI	GAGTC	3 cut(s)	16, 46, 242
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	2 cut(s)	8, 342
MslI	CAYNNNNRTG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	2 cut(s)	502, 727
NlaIII	CATG	7 cut(s)	98, 176, 191, 297, 433, 509, 734
NlaIV	GGNNCC	2 cut(s)	168, 169
NmuCI	GTSAC	2 cut(s)	135, 483
NspI	RCATGY	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	4 cut(s)	214, 628, 645, 723
PleI	GAGTC	3 cut(s)	16, 45, 241
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	3 cut(s)	16, 45, 241
Ppu21I	YACGTR	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	168, 169
PspPI	GGNCC	2 cut(s)	167, 550
PspPPI	RGGWCCY	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	34, 66
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	52, 559
RsaNI	GTAC	2 cut(s)	51, 558
RseI	CAYNNNNRTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	8, 342
SatI	GCNGC	4 cut(s)	213, 627, 644, 722
Sau3AI	GATC	2 cut(s)	502, 727
Sau96I	GGNCC	2 cut(s)	167, 550
SchI	GAGTC	3 cut(s)	16, 46, 242
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	630
SinI	GGWCC	2 cut(s)	167, 550
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	125, 576
SsiI	CCGC	2 cut(s)	212, 721
SspI	AATATT	2 cut(s)	612, 676
SspMI	CTAG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	46, 605
TaiI	ACGT	3 cut(s)	490, 519, 747
TaqI	TCGA	4 cut(s)	40, 562, 638, 737
TasI	AATT	2 cut(s)	125, 576
TauI	GCSGC	2 cut(s)	215, 724
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	8, 342
Tru9I	TTAA	2 cut(s)	8, 342
TscAI	CASTG	2 cut(s)	147, 419
TseFI	GTSAC	2 cut(s)	135, 483
TseI	GCWGC	2 cut(s)	626, 643
Tsp45I	GTSAC	2 cut(s)	135, 483
TspDTI	ATGAA	6 cut(s)	303, 341, 373, 530, 575, 612
TspRI	CASTG	2 cut(s)	147, 419
Tth111I	GACNNNGTC	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	167, 550
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	748
ZraI	GACGTC	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.