Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005229.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

79925 .. 83640

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005229.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggaagagaggatgacattatgcaacatggttattgaagctgggggtaaaaatggtatcgtccctgctgatagcactacatacaagtaccttgagctcattgctggtgcccttgccatgttagtagatgagactaaacaacagtttagatcatttcctaccatattgctccctaagaatcatgttgtactaatgagtttgttttcctatggatttagatttcttacagagtacagatttgatatctcaaaactggagccattggtggcaaagcgtcattctccagataaccgtgctttagcaagagagtgcaaagatgtgaaaattgacagagtctatattggatcttgtactggtgggaaaacagaggattttatggctgctgctaaagtttttctagcttcaggaaagaaggtcaaagtacccacttttcttgtacctgctacacaaaaggtttggatggacgtgtacagtcttccagtgccaggatcaggtggcaagacttgctcgcagatatttgaggaagctgtgtctggagcttctgatgctatcttgacgcggcgcatggctgcgcgtcagcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

194

Amino Acids

21.51

Weight (kDa)

9.28

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	107
AccII	CGCG	2 cut(s)	559, 574
AciI	CCGC	2 cut(s)	559, 580
AclWI	GGATC	2 cut(s)	352, 496
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	7 cut(s)	89, 189, 233, 352, 423, 438, 470
AfiI	CCNNNNNNNGG	2 cut(s)	485, 491
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	5 cut(s)	41, 97, 401, 527, 539
AluI	AGCT	5 cut(s)	41, 97, 401, 527, 539
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	352, 496
ApeKI	GCWGC	3 cut(s)	380, 383, 569
AspLEI	GCGC	2 cut(s)	564, 574
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	367, 370, 556
BccI	CCATC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	4 cut(s)	381, 384, 560, 570
BlsI	GCNGC	4 cut(s)	382, 385, 561, 571
Bme1390I	CCNGG	1 cut(s)	486
BmgBI	CACGTC	1 cut(s)	466
BmiI	GGNNCC	2 cut(s)	109, 258
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	467
BpmI	CTGGAG	3 cut(s)	267, 275, 555
BpuEI	CTTGAG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 491
Bse1I	ACTGG	3 cut(s)	258, 358, 479
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	18, 465
BseLI	CCNNNNNNNGG	2 cut(s)	485, 491
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	258, 358, 479
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	367, 370, 556
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	559, 574
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	485, 491
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	99, 112
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	149, 344, 488
BspACI	CCGC	2 cut(s)	559, 580
BspFNI	CGCG	2 cut(s)	559, 574
BspLI	GGNNCC	2 cut(s)	109, 258
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	352, 496
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	258, 358, 479
BssMI	GATC	3 cut(s)	149, 344, 488
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	3 cut(s)	144, 293, 473
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	18, 465
BstFNI	CGCG	2 cut(s)	559, 574
BstHHI	GCGC	2 cut(s)	564, 574
BstKTI	GATC	3 cut(s)	152, 347, 491
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	149, 344, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 545
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	2 cut(s)	559, 574
BstV1I	GCAGC	3 cut(s)	367, 370, 556
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	18, 465
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	509
CfoI	GCGC	2 cut(s)	564, 574
CseI	GACGC	3 cut(s)	263, 563, 565
Csp6I	GTAC	7 cut(s)	88, 188, 232, 351, 422, 437, 469
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	4 cut(s)	28, 118, 182, 565
CviJI	RGCY	8 cut(s)	41, 97, 259, 380, 401, 527, 539, 569
CviKI_1	RGCY	8 cut(s)	41, 97, 259, 380, 401, 527, 539, 569
CviQI	GTAC	7 cut(s)	88, 188, 232, 351, 422, 437, 469
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	151, 346, 490
DpnII	GATC	3 cut(s)	149, 344, 488
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	4 cut(s)	31, 121, 185, 568
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	27, 117, 181, 564
Fnu4HI	GCNGC	4 cut(s)	381, 384, 560, 570
FokI	GGATG	2 cut(s)	25, 472
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	4 cut(s)	381, 384, 560, 570
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	563, 573
GluI	GCNGC	4 cut(s)	381, 384, 560, 570
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	3 cut(s)	267, 275, 555
HgaI	GACGC	3 cut(s)	263, 563, 565
HhaI	GCGC	2 cut(s)	564, 574
Hin1II	CATG	4 cut(s)	31, 121, 185, 568
Hin6I	GCGC	2 cut(s)	562, 572
HinP1I	GCGC	2 cut(s)	562, 572
HinfI	GANTC	2 cut(s)	178, 333
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	4 cut(s)	284, 405, 534, 553
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	3 cut(s)	144, 293, 473
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	2 cut(s)	24, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 545
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	4 cut(s)	31, 121, 185, 568
HspAI	GCGC	2 cut(s)	562, 572
Kzo9I	GATC	3 cut(s)	149, 344, 488
LmnI	GCTCC	3 cut(s)	174, 256, 536
Lsp1109I	GCAGC	3 cut(s)	367, 370, 556
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	465
MalI	GATC	3 cut(s)	151, 346, 490
MboI	GATC	3 cut(s)	149, 344, 488
MboII	GAAGA	2 cut(s)	17, 467
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	99, 112
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	342
MnlI	CCTC	3 cut(s)	3, 361, 514
MspA1I	CMGCKG	1 cut(s)	580
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	2 cut(s)	559, 574
MwoI	GCNNNNNNNGC	2 cut(s)	504, 545
NdeII	GATC	3 cut(s)	149, 344, 488
NlaIII	CATG	4 cut(s)	31, 121, 185, 568
NlaIV	GGNNCC	2 cut(s)	109, 258
PfeI	GAWTC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	382, 385, 561, 571
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	109, 258
PsuI	RGATCY	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	7 cut(s)	89, 189, 233, 352, 423, 438, 470
RsaNI	GTAC	7 cut(s)	88, 188, 232, 351, 422, 437, 469
SacI	GAGCTC	1 cut(s)	99
SatI	GCNGC	4 cut(s)	381, 384, 560, 570
Sau3AI	GATC	3 cut(s)	149, 344, 488
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	2 cut(s)	99, 112
SfaNI	GCATC	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	559, 580
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	144, 293, 473
TaiI	ACGT	1 cut(s)	468
TasI	AATT	1 cut(s)	324
TatI	WGTACW	4 cut(s)	187, 231, 350, 468
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	1 cut(s)	486
TseI	GCWGC	3 cut(s)	380, 383, 569
TspRI	CASTG	1 cut(s)	486
Tth111I	GACNNNGTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.