Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8220062.1

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 739

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8220062.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 235 bp

agggtgtatgccatattgctcttgctcaagaaggtcattgcaggcctggagaggtgctgctgggtacagattctcacacctgcaccactggagcttttggacaatttgctactggaatcgggatcactgatgctggtttcgtattgggcactgggaaactgttgctcaaggtgcctccaactctgagatttgtgctggatggtgaaatgcctgactatttgcttgccaaagactt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

77

Amino Acids

8.01

Weight (kDa)

5.4

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	130
AfaI	GTAC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	68, 110
BpuEI	CTTGAG	2 cut(s)	11, 151
Bse1I	ACTGG	3 cut(s)	93, 117, 156
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	3 cut(s)	93, 117, 156
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	3 cut(s)	93, 117, 156
BssMI	GATC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	43, 224
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	86, 125, 149
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	43, 224
Csp6I	GTAC	1 cut(s)	65
CviJI	RGCY	2 cut(s)	45, 94
CviKI_1	RGCY	2 cut(s)	45, 94
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eco147I	AGGCCT	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	45
FaiI	YATR	2 cut(s)	9, 14
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	64
GsuI	CTGGAG	2 cut(s)	68, 110
HaeIII	GGCC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	70, 116
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	28, 120
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	41, 83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	120
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	2 cut(s)	45, 185
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	70, 116
PkrI	GCNGC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	36, 56, 82, 96, 173
SfaNI	GCATC	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	26, 166
SmoI	CTYRAG	2 cut(s)	26, 166
Sse9I	AATT	1 cut(s)	103
SseBI	AGGCCT	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	70, 116
TscAI	CASTG	3 cut(s)	93, 132, 156
TseI	GCWGC	1 cut(s)	57
TspRI	CASTG	3 cut(s)	93, 132, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.