Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000647

Physical Location & Seq

Genomic Coordinates Reverse (-)

5173147 .. 5182359

Gene Structure 9213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCACTTCTGGGAATCAGTTGGTGCCAGCGAATCCATCCACTGAGGGTGGTGCGACAACTGGTGGTGGTGCGGCGACTGGTGGCGGTGCCACTACTGGTGGAGGTGAGACGGCTTCCAGCCAGGCGAAGACAGCAAAGAGAAAGAGGGAGGATTCGAGTAGGACTCGAAACAGCAGTTGTCGGTCTAATGTCAAGACGGGAATGACAATGACGGAGAAGATATTGGCTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAGAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACTACTGATGAGCGTGCAAACCGTAATGTGGATATCTTGAGGGAATTTTGCACAGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGACGTTAACTTTAGTTCACAATTTGGCAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGTCAGAAATCAACAAGGAGTCCGGTGATTTTCCAGTGAAGAGACCCACAGAGGAGGAAGAGACCGAGACTGGCAAAGAGCCGGATTGCATTTATGCTGTTATTCCTGGATGGACTCCAATGTTAGCCCAATGTGACCCGGTTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

250

Amino Acids

27.41

Weight (kDa)

5.86

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13430
fragaria_vesca	FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_4g04720 FvH4_5g09890
malus_domestica	MD13G1222700.v1.1 MD13G1222900.v1.1 MD16G1227200.v1.1
prunus_persica	Prupe.1G049300_v2.0.a1
pyrus_communis	pycom13g19670 pycom16g19040
rosa_chinensis	RchiOBHm_Chr4g0395521 RchiOBHm_Chr4g0395531 RchiOBHm_Chr6g0260271 RchiOBHm_Chr6g0278291
rosa_laevigata	RLG00000009126 RLG00000009614 RLG00000009616 RLG00000019332 RLG00000035454
rosa_multiflora	Rmu_co8195818.1_g000001 Rmu_co8220062.1_g000001 Rmu_sc0000041.1_g000006 Rmu_sc0000744.1_g000082 Rmu_sc0001142.1_g000007 Rmu_sc0001669.1_g000055 Rmu_sc0003400.1_g000015 Rmu_sc0005229.1_g000033 Rmu_sc0007340.1_g000006 Rmu_sc0008351.1_g000002 Rmu_sc0008351.1_g000016 Rmu_sc0039027.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324270 Rroxscaffold_5G00340460 Rroxscaffold_5G00340480
rosa_rugosa	Rorug01G0023800 Rorug01G0050600 Rorug02G0280700 Rorug03G0355400 Rorug07G0181700
rosa_samantha	Rh1CG053700 Rh1DG057900 Rh3CG159300 Rh3DG159800 Rh3DG297100 Rh4AG060800 Rh4AG061300 Rh4AG061500 Rh4BG059800 Rh4BG060100 Rh4CG065500 Rh4CG065800 Rh4DG055700 Rh4DG056000 Rh5BG283600 Rh5BG284500 Rh5BG323300 Rh5BG330600 Rh5BG516600 Rh5CG076000 Rh5CG289900 Rh5DG060900 Rh5DG293300 Rh5DG293900 Rh5DG334300 Rh5DG342000 Rh6AG129800 Rh6DG223600
rosa_wichuraiana	Rw0G000910 Rw2G008950 Rw2G012250 Rw3G021630 Rw4G005010 Rw4G005020 Rw4G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	25, 89
AciI	CCGC	2 cut(s)	74, 87
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	455
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	2 cut(s)	12, 439
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	5 cut(s)	123, 259, 316, 594, 706
Alw26I	GTCTC	4 cut(s)	104, 637, 656, 662
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	3 cut(s)	3, 313, 592
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	3 cut(s)	119, 275, 638
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	25, 89
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	137
BccI	CCATC	2 cut(s)	46, 705
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	5 cut(s)	125, 261, 318, 596, 708
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	4 cut(s)	104, 637, 656, 662
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	6 cut(s)	125, 261, 318, 596, 708, 740
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	27, 91
BmrFI	CCNGG	6 cut(s)	125, 261, 318, 596, 708, 740
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BpmI	CTGGAG	1 cut(s)	617
BpuEI	CTTGAG	2 cut(s)	469, 560
BpuMI	CCSGG	1 cut(s)	740
BsaBI	GATNNNNATC	1 cut(s)	386
BsaI	GGTCTC	2 cut(s)	637, 656
BsaJI	CCNNGG	2 cut(s)	259, 316
BsaWI	WCCGGW	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 439
Bse1I	ACTGG	5 cut(s)	67, 85, 103, 635, 676
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	5 cut(s)	125, 261, 318, 596, 708
BseDI	CCNNGG	2 cut(s)	259, 316
BseGI	GGATG	2 cut(s)	38, 716
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	2 cut(s)	12, 439
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	36, 231
BseNI	ACTGG	5 cut(s)	67, 85, 103, 635, 676
BseRI	GAGGAG	1 cut(s)	668
BshFI	GGCC	3 cut(s)	5, 315, 594
BshNI	GGYRCC	2 cut(s)	25, 89
BsiSI	CCGG	3 cut(s)	624, 683, 740
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	12, 439
BsmAI	GTCTC	4 cut(s)	104, 637, 656, 662
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	5, 315, 594
Bso31I	GGTCTC	2 cut(s)	637, 656
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	2 cut(s)	74, 87
BspANI	GGCC	3 cut(s)	5, 315, 594
BspCNI	CTCAG	2 cut(s)	37, 232
BspLI	GGNNCC	2 cut(s)	27, 91
BspPI	GGATC	1 cut(s)	507
BspT107I	GGYRCC	2 cut(s)	25, 89
BspTNI	GGTCTC	2 cut(s)	637, 656
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	5 cut(s)	67, 85, 103, 635, 676
BssECI	CCNNGG	2 cut(s)	259, 316
BssMI	GATC	1 cut(s)	499
Bst2UI	CCWGG	5 cut(s)	125, 261, 318, 596, 708
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	635, 654
BstC8I	GCNNGC	4 cut(s)	30, 426, 533, 592
BstDEI	CTNAG	2 cut(s)	45, 240
BstF5I	GGATG	2 cut(s)	38, 716
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	4 cut(s)	104, 637, 656, 662
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	5 cut(s)	125, 261, 318, 596, 708
BstSCI	CCNGG	6 cut(s)	123, 259, 316, 594, 706, 738
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	3 cut(s)	5, 315, 594
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	38, 716
BtsIMutI	CAGTG	2 cut(s)	42, 642
Cac8I	GCNNGC	4 cut(s)	30, 426, 533, 592
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	2 cut(s)	302, 562
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	45, 240
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	635, 654
EarI	CTCTTC	2 cut(s)	635, 654
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	2 cut(s)	637, 656
Eco32I	GATATC	2 cut(s)	445, 493
EcoRII	CCWGG	5 cut(s)	123, 259, 316, 594, 706
EcoRV	GATATC	2 cut(s)	445, 493
EcoT38I	GRGCYC	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	305, 565
FaiI	YATR	8 cut(s)	303, 392, 405, 407, 489, 558, 563, 696
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	301, 561
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	25, 723
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	3 cut(s)	5, 315, 594
HapII	CCGG	3 cut(s)	624, 683, 740
Hin1II	CATG	2 cut(s)	305, 565
HincII	GTYRAC	2 cut(s)	280, 511
HindII	GTYRAC	2 cut(s)	280, 511
HinfI	GANTC	7 cut(s)	16, 34, 155, 166, 330, 620, 715
HpaI	GTTAAC	2 cut(s)	280, 511
HpaII	CCGG	3 cut(s)	624, 683, 740
HphI	GGTGA	3 cut(s)	119, 275, 638
Hpy166II	GTNNAC	3 cut(s)	280, 511, 521
Hpy188I	TCNGA	2 cut(s)	241, 607
Hpy188III	TCNNGA	5 cut(s)	196, 337, 448, 503, 577
Hpy8I	GTNNAC	3 cut(s)	280, 511, 521
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	306, 507
HpyCH4V	TGCA	5 cut(s)	359, 428, 462, 590, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	45, 240
HpySE526I	ACGT	2 cut(s)	306, 507
Hsp92II	CATG	2 cut(s)	305, 565
KspAI	GTTAAC	2 cut(s)	280, 511
Kzo9I	GATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	306, 507
MaeIII	GTNAC	2 cut(s)	263, 734
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	5 cut(s)	142, 232, 325, 652, 671
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	251, 455, 524
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	160, 629, 709
MnlI	CCTC	8 cut(s)	40, 98, 141, 145, 444, 594, 646, 649
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	279, 510
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	624, 683, 740
MspR9I	CCNGG	6 cut(s)	125, 261, 318, 596, 708, 740
MunI	CAATTG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	5 cut(s)	125, 261, 318, 596, 708
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	740
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	2 cut(s)	305, 565
NlaIV	GGNNCC	2 cut(s)	27, 91
NmuCI	GTSAC	2 cut(s)	263, 734
PceI	AGGCCT	1 cut(s)	594
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	16, 34, 155, 330
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	3 cut(s)	160, 628, 709
PpsI	GAGTC	3 cut(s)	160, 628, 709
Psp6I	CCWGG	5 cut(s)	123, 259, 316, 594, 706
PspGI	CCWGG	5 cut(s)	123, 259, 316, 594, 706
PspN4I	GGNNCC	2 cut(s)	27, 91
PspPI	GGNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	279, 510
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	3 cut(s)	160, 629, 709
ScrFI	CCNGG	6 cut(s)	125, 261, 318, 596, 708, 740
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	109, 265, 309, 366, 397, 510, 585, 605
SmlI	CTYRAG	2 cut(s)	448, 575
SmoI	CTYRAG	2 cut(s)	448, 575
Sse9I	AATT	3 cut(s)	251, 455, 524
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	2 cut(s)	74, 87
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	6 cut(s)	123, 259, 316, 594, 706, 738
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	309, 510
TaqI	TCGA	2 cut(s)	158, 169
TaqII	GACCGA	2 cut(s)	174, 680
TasI	AATT	3 cut(s)	251, 455, 524
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	4 cut(s)	16, 34, 155, 330
Tru1I	TTAA	2 cut(s)	279, 510
Tru9I	TTAA	2 cut(s)	279, 510
TscAI	CASTG	2 cut(s)	49, 642
TseFI	GTSAC	2 cut(s)	263, 734
Tsp45I	GTSAC	2 cut(s)	263, 734
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	2 cut(s)	49, 642
XapI	RAATTY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.